script for reannotating and reporting variants from WGS #7
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aarthi-mohan
approved these changes
Oct 13, 2020
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I added a script to this branch for panel reports: this would perform (assumes the bed file from HPO is already created and placed inside
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Use generate_reports.sh to re-annotate and generate reports for coding, panel, and panel-flank variants.
Usage: generate_reports.sh <family_id> <report_type>
Where report_type is 'wes' if generating coding variants, or 'wgs' if generating panel/panel-flank variants.