gtex-openapi

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This Python package is automatically generated by the OpenAPI Generator project:

• API version: 2.0.0
• Package version: 1.0.0
• Generator version: 7.13.0-SNAPSHOT
• Build package: org.openapitools.codegen.languages.PythonClientCodegen

Requirements.

Python 3.8+

Installation & Usage

pip install

If the python package is hosted on a repository, you can install directly using:

pip install git+https://github.com/GIT_USER_ID/GIT_REPO_ID.git

(you may need to run pip with root permission: sudo pip install git+https://github.com/GIT_USER_ID/GIT_REPO_ID.git)

Then import the package:

import gtex_openapi

Setuptools

Install via Setuptools.

python setup.py install --user

(or sudo python setup.py install to install the package for all users)

Then import the package:

import gtex_openapi

Tests

Execute pytest to run the tests.

Getting Started

Please follow the installation procedure and then run the following:

import gtex_openapi
from gtex_openapi.rest import ApiException
from pprint import pprint

# Defining the host is optional and defaults to http://localhost
# See configuration.py for a list of all supported configuration parameters.
configuration = gtex_openapi.Configuration(
    host = "http://localhost"
)



# Enter a context with an instance of the API client
with gtex_openapi.ApiClient(configuration) as api_client:
    # Create an instance of the API class
    api_instance = gtex_openapi.AdminEndpointsApi(api_client)
    page = 0 # int | The 0-based numeric ID of the page to retrieve (optional) (default to 0)
    items_per_page = 250 # int |  (optional) (default to 250)

    try:
        # Get Maintenance Message
        api_response = api_instance.get_maintenance_message_api_v2_admin_maintenance_message_get(page=page, items_per_page=items_per_page)
        print("The response of AdminEndpointsApi->get_maintenance_message_api_v2_admin_maintenance_message_get:\n")
        pprint(api_response)
    except ApiException as e:
        print("Exception when calling AdminEndpointsApi->get_maintenance_message_api_v2_admin_maintenance_message_get: %s\n" % e)

Documentation for API Endpoints

All URIs are relative to http://localhost

Class	Method	HTTP request	Description
AdminEndpointsApi	get_maintenance_message_api_v2_admin_maintenance_message_get	GET /api/v2/admin/maintenanceMessage	Get Maintenance Message
AdminEndpointsApi	get_news_item_api_v2_admin_news_item_get	GET /api/v2/admin/newsItem	Get News Item
BiobankDataEndpointsApi	download_api_v2_biobank_download_get	GET /api/v2/biobank/download	Download
BiobankDataEndpointsApi	get_sample_api_v2_biobank_sample_get	GET /api/v2/biobank/sample	Get Sample
DatasetsEndpointsApi	get_annotation_api_v2_dataset_annotation_get	GET /api/v2/dataset/annotation	Get Annotation
DatasetsEndpointsApi	get_collapsed_gene_model_exon_api_v2_dataset_collapsed_gene_model_exon_get	GET /api/v2/dataset/collapsedGeneModelExon	Get Collapsed Gene Model Exon
DatasetsEndpointsApi	get_downloads_page_data_api_v2_dataset_open_access_files_metadata_get	GET /api/v2/dataset/openAccessFilesMetadata	Get Downloads Page Data
DatasetsEndpointsApi	get_file_list_api_v2_dataset_file_list_get	GET /api/v2/dataset/fileList	Get File List
DatasetsEndpointsApi	get_full_get_collapsed_gene_model_exon_api_v2_dataset_full_collapsed_gene_model_exon_get	GET /api/v2/dataset/fullCollapsedGeneModelExon	Get Full Get Collapsed Gene Model Exon
DatasetsEndpointsApi	get_functional_annotation_api_v2_dataset_functional_annotation_get	GET /api/v2/dataset/functionalAnnotation	Get Functional Annotation
DatasetsEndpointsApi	get_linkage_disequilibrium_by_variant_data_api_v2_dataset_ld_by_variant_get	GET /api/v2/dataset/ldByVariant	Get Linkage Disequilibrium By Variant Data
DatasetsEndpointsApi	get_linkage_disequilibrium_data_api_v2_dataset_ld_get	GET /api/v2/dataset/ld	Get Linkage Disequilibrium Data
DatasetsEndpointsApi	get_sample_api_v2_dataset_sample_get	GET /api/v2/dataset/sample	Get Sample
DatasetsEndpointsApi	get_subject_api_v2_dataset_subject_get	GET /api/v2/dataset/subject	Get Subject
DatasetsEndpointsApi	get_tissue_site_detail_api_v2_dataset_tissue_site_detail_get	GET /api/v2/dataset/tissueSiteDetail	Get Tissue Site Detail
DatasetsEndpointsApi	get_variant_api_v2_dataset_variant_get	GET /api/v2/dataset/variant	Get Variant
DatasetsEndpointsApi	get_variant_by_location_api_v2_dataset_variant_by_location_get	GET /api/v2/dataset/variantByLocation	Get Variant By Location
DynamicAssociationEndpointsApi	bulk_calculate_expression_quantitative_trait_loci_api_v2_association_dyneqtl_post	POST /api/v2/association/dyneqtl	Bulk Calculate Expression Quantitative Trait Loci
DynamicAssociationEndpointsApi	calculate_expression_quantitative_trait_loci_api_v2_association_dyneqtl_get	GET /api/v2/association/dyneqtl	Calculate Expression Quantitative Trait Loci
DynamicAssociationEndpointsApi	calculate_ieqtls_api_v2_association_dynieqtl_get	GET /api/v2/association/dynieqtl	Calculate Ieqtls
DynamicAssociationEndpointsApi	calculate_isqtls_api_v2_association_dynisqtl_get	GET /api/v2/association/dynisqtl	Calculate Isqtls
DynamicAssociationEndpointsApi	calculate_splicing_quantitative_trait_loci_api_v2_association_dynsqtl_get	GET /api/v2/association/dynsqtl	Calculate Splicing Quantitative Trait Loci
ExpressionDataEndpointsApi	get_clustered_median_exon_expression_api_v2_expression_clustered_median_exon_expression_get	GET /api/v2/expression/clusteredMedianExonExpression	Get Clustered Median Exon Expression
ExpressionDataEndpointsApi	get_clustered_median_gene_expression_api_v2_expression_clustered_median_gene_expression_get	GET /api/v2/expression/clusteredMedianGeneExpression	Get Clustered Median Gene Expression
ExpressionDataEndpointsApi	get_clustered_median_junction_expression_api_v2_expression_clustered_median_junction_expression_get	GET /api/v2/expression/clusteredMedianJunctionExpression	Get Clustered Median Junction Expression
ExpressionDataEndpointsApi	get_clustered_median_transcript_expression_api_v2_expression_clustered_median_transcript_expression_get	GET /api/v2/expression/clusteredMedianTranscriptExpression	Get Clustered Median Transcript Expression
ExpressionDataEndpointsApi	get_expression_pca_api_v2_expression_expression_pca_get	GET /api/v2/expression/expressionPca	Get Expression Pca
ExpressionDataEndpointsApi	get_gene_expression_api_v2_expression_gene_expression_get	GET /api/v2/expression/geneExpression	Get Gene Expression
ExpressionDataEndpointsApi	get_median_exon_expression_api_v2_expression_median_exon_expression_get	GET /api/v2/expression/medianExonExpression	Get Median Exon Expression
ExpressionDataEndpointsApi	get_median_gene_expression_api_v2_expression_median_gene_expression_get	GET /api/v2/expression/medianGeneExpression	Get Median Gene Expression
ExpressionDataEndpointsApi	get_median_junction_expression_api_v2_expression_median_junction_expression_get	GET /api/v2/expression/medianJunctionExpression	Get Median Junction Expression
ExpressionDataEndpointsApi	get_median_transcript_expression_api_v2_expression_median_transcript_expression_get	GET /api/v2/expression/medianTranscriptExpression	Get Median Transcript Expression
ExpressionDataEndpointsApi	get_single_nucleus_gex_api_v2_expression_single_nucleus_gene_expression_get	GET /api/v2/expression/singleNucleusGeneExpression	Get Single Nucleus Gex
ExpressionDataEndpointsApi	get_single_nucleus_gex_summary_api_v2_expression_single_nucleus_gene_expression_summary_get	GET /api/v2/expression/singleNucleusGeneExpressionSummary	Get Single Nucleus Gex Summary
ExpressionDataEndpointsApi	get_top_expressed_genes_api_v2_expression_top_expressed_gene_get	GET /api/v2/expression/topExpressedGene	Get Top Expressed Genes
GTExPortalAPIInfoApi	get_service_info_api_v2_get	GET /api/v2/	Get Service Info
HistologyEndpointsApi	get_image_api_v2_histology_image_get	GET /api/v2/histology/image	Get Image
MetadataEndpointsApi	get_dataset_info_api_v2_metadata_dataset_get	GET /api/v2/metadata/dataset	Get Dataset Info
ReferenceGenomeEndpointsApi	get_exons_api_v2_reference_exon_get	GET /api/v2/reference/exon	Get Exons
ReferenceGenomeEndpointsApi	get_gene_search_api_v2_reference_gene_search_get	GET /api/v2/reference/geneSearch	Get Gene Search
ReferenceGenomeEndpointsApi	get_genes_api_v2_reference_gene_get	GET /api/v2/reference/gene	Get Genes
ReferenceGenomeEndpointsApi	get_genomic_features_api_v2_reference_features_feature_id_get	GET /api/v2/reference/features/{featureId}	Get Genomic Features
ReferenceGenomeEndpointsApi	get_gwas_catalog_by_location_api_v2_reference_gwas_catalog_by_location_get	GET /api/v2/reference/gwasCatalogByLocation	Get Gwas Catalog By Location
ReferenceGenomeEndpointsApi	get_neighbor_gene_api_v2_reference_neighbor_gene_get	GET /api/v2/reference/neighborGene	Get Neighbor Gene
ReferenceGenomeEndpointsApi	get_transcripts_api_v2_reference_transcript_get	GET /api/v2/reference/transcript	Get Transcripts
StaticAssociationEndpointsApi	get_eqtl_genes_api_v2_association_egene_get	GET /api/v2/association/egene	Get Eqtl Genes
StaticAssociationEndpointsApi	get_fine_mapping_api_v2_association_fine_mapping_get	GET /api/v2/association/fineMapping	Get Fine Mapping
StaticAssociationEndpointsApi	get_independent_eqtl_api_v2_association_independent_eqtl_get	GET /api/v2/association/independentEqtl	Get Independent Eqtl
StaticAssociationEndpointsApi	get_multi_tissue_eqtls_api_v2_association_metasoft_get	GET /api/v2/association/metasoft	Get Multi Tissue Eqtls
StaticAssociationEndpointsApi	get_significant_single_tissue_eqtls_api_v2_association_single_tissue_eqtl_get	GET /api/v2/association/singleTissueEqtl	Get Significant Single Tissue Eqtls
StaticAssociationEndpointsApi	get_significant_single_tissue_eqtls_by_location_api_v2_association_single_tissue_eqtl_by_location_get	GET /api/v2/association/singleTissueEqtlByLocation	Get Significant Single Tissue Eqtls By Location
StaticAssociationEndpointsApi	get_significant_single_tissue_ieqtls_api_v2_association_single_tissue_i_eqtl_get	GET /api/v2/association/singleTissueIEqtl	Get Significant Single Tissue Ieqtls
StaticAssociationEndpointsApi	get_significant_single_tissue_isqtls_api_v2_association_single_tissue_i_sqtl_get	GET /api/v2/association/singleTissueISqtl	Get Significant Single Tissue Isqtls
StaticAssociationEndpointsApi	get_significant_single_tissue_sqtls_api_v2_association_single_tissue_sqtl_get	GET /api/v2/association/singleTissueSqtl	Get Significant Single Tissue Sqtls
StaticAssociationEndpointsApi	get_sqtl_genes_api_v2_association_sgene_get	GET /api/v2/association/sgene	Get Sqtl Genes

Documentation For Models

• AgeAndCountSummary
• Annotation
• AppModelsRequestParametersGencodeVersion
• AppModelsRequestParametersGenomeBuild
• AppModelsRequestParametersHardyScale
• AppModelsRequestParametersMaterialType
• AppModelsResponsesGencodeVersion
• AppModelsResponsesGenomeBuild
• AppModelsResponsesHardyScale
• AppModelsResponsesMaterialType
• AutolysisScore
• AvailableProjects
• BiobankResponse
• BiobankSample
• CellType
• CellTypeInfo
• Chromosome
• ClusteredMedianExonExpression
• ClusteredMedianGeneExpression
• ClusteredMedianJunctionExpression
• ClusteredMedianTranscriptExpression
• CollapsedGeneModelExon
• DataInnerInner
• DataType
• Dataset
• DatasetId
• DatasetSample
• Datecreated
• DonorAgeBracket
• DonorAttribute
• DonorSex
• DynamicEqtlBody
• Eqtl
• EqtlGene
• Error
• Exon
• ExpressionPCA
• Feature
• File
• FineMapping
• FunctionalAnnotation
• GWAS
• Gene
• GeneExpression
• HTTPValidationError
• HistologySample
• IEqtl
• IGVResponse
• ISqtl
• IndependentEqtl
• IschemicTimeGroup
• LocationInner
• MaintenanceMessage
• MedianExonExpression
• MedianGeneExpression
• MedianJunctionExpression
• MedianTranscriptExpression
• Message
• MetaSoft
• Nes
• NewsItem
• OpenAccessFile
• OpenAccessFilesMetadata
• OpenAccessFolder
• OpenAccessFolderChildren
• Organization
• OrganizationNames
• OriginalMaterialType
• PaginatedResponseAnnotation
• PaginatedResponseCollapsedGeneModelExon
• PaginatedResponseDatasetSample
• PaginatedResponseEqtlGene
• PaginatedResponseExon
• PaginatedResponseExpressionPCA
• PaginatedResponseFineMapping
• PaginatedResponseFunctionalAnnotation
• PaginatedResponseGWAS
• PaginatedResponseGene
• PaginatedResponseGeneExpression
• PaginatedResponseHistologySample
• PaginatedResponseIndependentEqtl
• PaginatedResponseListUnionStrFloat
• PaginatedResponseMaintenanceMessage
• PaginatedResponseMedianExonExpression
• PaginatedResponseMedianGeneExpression
• PaginatedResponseMedianJunctionExpression
• PaginatedResponseMedianTranscriptExpression
• PaginatedResponseMetaSoft
• PaginatedResponseNewsItem
• PaginatedResponseSGene
• PaginatedResponseSingleNucleusGeneExpressionResult
• PaginatedResponseSingleNucleusGeneExpressionSummary
• PaginatedResponseSingleTissueEqtl
• PaginatedResponseSingleTissueIEqtl
• PaginatedResponseSingleTissueISqtl
• PaginatedResponseSingleTissueSqtl
• PaginatedResponseSubject
• PaginatedResponseTissueSiteDetail
• PaginatedResponseTopExpressedGenes
• PaginatedResponseTranscript
• PaginatedResponseVariant
• PaginationInfo
• PathCategory
• PostDynamicEqtlResult
• PostEqtl
• PostEqtlError
• Pvalue
• Pvaluethreshold
• SGene
• SampleSortBy
• ServiceInfo
• Sex
• SexBasedSummary
• SingleNucleusGeneExpressionResult
• SingleNucleusGeneExpressionSummary
• SingleTissueEqtl
• SingleTissueIEqtl
• SingleTissueISqtl
• SingleTissueSqtl
• SortBy
• SortDirection
• Sqtl
• Strand
• Subject
• Subsetgroup
• TissueLevelMetasoftInfo
• TissueSiteDetail
• TissueSiteDetailId
• TissueSiteOntologyId
• Tissuesitedetailid
• TissuesitedetailidInner
• TopExpressedGenes
• Transcript
• Tstatistic
• Units
• ValidationError
• Variant
• VariantSortBy

Documentation For Authorization

Endpoints do not require authorization.

Author