Update changelong for versions 0.1.0 - 0.2.0

workflows/amr/README.md

@@ -1,10 +1,36 @@
-## CZ ID AMR Workflow
+# CZ ID AMR Workflow
 
 CZ ID's AMR pipeline implements the [Resistance Gene Identifier (RGI)](https://github.com/arpcard/rgi) tool for AMR sequence detection. The RGI tool is used to compare quality controlled reads and assembled contigs against AMR references sequences from the [Comprehensive Antibiotic Resistance Database](https://card.mcmaster.ca/) (CARD).  Further documentation on how to use the CZ ID AMR workflow, including a [pipeline workflow](https://chanzuckerberg.zendesk.com/hc/en-us/articles/15091031482644-AMR-Pipeline-Workflow) can be found in the [CZ ID help center](https://chanzuckerberg.zendesk.com/hc/en-us/categories/15001531592980-Antimicrobial-Resistance-Analysis).
 
-## Changelog
+# Changelog
+
+## [1.2.3] -- 2023-05-24 -- Initial pipeline release
+
+## [0.1.0] -- 2022-08-25
+
+### Added
+
+- Python requirements.txt file to run workflow without conda
+- Dockerfile based on Ubuntu 20.04 image
+- CARD RGI dependencies installed in Docker build
+- CARD databases added as part of Docker image build
+- WDL workflow support for samples with non-host reads and contigs
+- Add task RunRgiMain to analyze input contigs using `rgi main`
+- Add task RunRgiBwtKma to analyze input non-host reads using `rgi bwt`
+- Add task RunRgiKmerMain to run k-mer taxonomic classification on input contigs
+- Add task RunRgiKmerBwt torun k-mer taxonomic classification on non-host reads
+- Add task RunResultsPerSample that collects RGI output into TSV files; primary output in final_summary.tsv
+- Add Python tests for RgiMain and RgiBwtKma WDL tasks
+- Add test contigs and non-host reads data
+
+### Fixed
+
+
+### Changed
+
+
+### Removed
 
-v1.2.3 -- May 24, 2023 -- Initial pipeline release
 
 ## Reference Files