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Add Joint Training #288

Merged
merged 16 commits into from
Dec 20, 2023
Merged

Add Joint Training #288

merged 16 commits into from
Dec 20, 2023

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anwai98
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@anwai98 anwai98 commented Dec 14, 2023

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constantinpape
constantinpape reviewed Dec 18, 2023
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Looks good! Implementation of the optimizer is exactly what I meant.

micro_sam/training/joint_sam_trainer.py Outdated Show resolved Hide resolved
@anwai98 anwai98 marked this pull request as ready for review December 20, 2023 15:09
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anwai98 commented Dec 20, 2023

This PR now looks good to go as well. This includes:

  • Refactoring the SamTrainer
  • Adding JointSamTrainer for the joint training setup
  • Adding a script for training within the joint training framework.
  • (Misc.) Performing automatic instance segmentation using the UNETR weights from finetuned specialist models.

@constantinpape constantinpape merged commit cc4fe4b into dev Dec 20, 2023
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