Add ampliconstats process for all the files (Samtools development branch) #58
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As this feature is available only on samtools development branch, anyone who wants to use it can follow below instructions:
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sb10
suggested changes
Jun 29, 2020
sb10
approved these changes
Jun 29, 2020
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This feature of samtools is only available in it's development branch, hence it cannot be directly used.
I have created a separate repo and updated the info in README.md file on how to build and use conda packages for htslib and samtools from their development branch.
OR
samtools entry can be removed from the enviroment.yml file and have the development branch installed manually.
This pull request generates ampliconstats on all the files in one go (as intended) by passing --ampliconstats flag to nextflow run command.