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Job io extra 2 #221

Merged
merged 111 commits into from
Mar 16, 2021
Merged

Job io extra 2 #221

merged 111 commits into from
Mar 16, 2021

Commits on Mar 3, 2021

  1. support json/xml according to accept header + add job status links (#58… 

    …) + extra job routes (#86) + compliance with ogc api
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  2. update changelog - fix #53, #58, #86

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  3. convert conformance / frontpage references to literal http links

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  4. adjust 201 on created job (fix #14) + update headers in swagger + def… 

    …ault caching values if settings not defined in weaver config
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  5. fix changelog

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  6. adjust tests status codes to use now expected 201 on process creation

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  7. update test to build app from real weaver main - inherit all defaults… 

    … setup
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  8. fix frontpage with caching not working directly on request view function

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  9. minor doc updates

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  10. fix cwl i/o handling if specified with only string representy the type

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  11. fix tests

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  12. bugfix default config path resolution

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  13. updates to api schemas and links/output/results returned by job routes

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  14. fixes that help support windows execution of weaver

    @fmigneault-crim @fmigneault
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  15. swagger rendering updates

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  16. tweaks to build OpenAPI-3 docs

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  17. openapi-3 hanlding working with fmigneault/cornice.ext.swagger repo

    @fmigneault
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  18. functional openapi-3 schema generation

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  19. more detailed openapi-3 auto-spec using fmigneault/cornice.ext.swagge… 

    …r repo
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  20. fix using SchemaNode URL

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  21. add image/tiff format (relates to #100)

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  22. add some openapi titles

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  23. better metadata language href/value

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  24. support json/xml according to accept header + add job status links (#58… 

    …) + extra job routes (#86) + compliance with ogc api
    @fmigneault
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  25. update changelog - fix #53, #58, #86

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  26. convert conformance / frontpage references to literal http links

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  27. adjust 201 on created job (fix #14) + update headers in swagger + def… 

    …ault caching values if settings not defined in weaver config
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  28. fix changelog

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  29. fix frontpage with caching not working directly on request view function

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  30. fix cwl i/o handling if specified with only string representy the type

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  31. fix tests

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  32. updates to api schemas and links/output/results returned by job routes

    @fmigneault
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  33. swagger rendering updates

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  34. fixes that help support windows execution of weaver

    @fmigneault-crim @fmigneault
    fmigneault-crim authored and fmigneault committed Mar 3, 2021
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  35. tweaks to build OpenAPI-3 docs

    @fmigneault
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  36. openapi-3 hanlding working with fmigneault/cornice.ext.swagger repo

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  37. more detailed openapi-3 auto-spec using fmigneault/cornice.ext.swagge… 

    …r repo
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  38. better metadata language href/value

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  39. update to better support null format

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  40. adjust accept-language vars

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  41. fixes to schema validation and deploy stacker-v2 functional

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  42. fix makefile if for real

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  43. functional variable schema

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  44. fixes for variable/anyof/oneof schemas & tests with schemas using them

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  45. fix setup install dependencies using github links

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  46. fix variable field deserialize with many objects provided

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  47. job.started calculation of job.duration + adjust serialize/deserializ… 

    …ee into appropriate calls
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  48. fix lint

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  49. fix imports

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  50. fix lint

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  51. avoid error due to copy of example config files

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  52. (wip) reuse colander 'deserialize' + better log tween exceptions + us… 

    …e common mock for stdout/stderr cwl tests
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  53. add test case of ssl verification from request-options when WPS queri… 

    …es are used
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  54. add default OAS-3 spec in type schema dispatcher

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  55. address inconsistent wrong-import-order flag of posixpath std package

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  56. fix posixpath pylint/isort lint order + force cwltool/cornice_swagger… 

    … 3rd party (not detected as such with local dev installs)
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  57. more colander schema fixes

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  58. more work & tests on schema deserialization

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  59. makefile conda resolution patch

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  60. fix lint

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  61. update changelog on top of new major version

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Commits on Mar 4, 2021

  1. resolve schema validation issues

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  2. Merge branch 'master' into job-io-extra-2

    @fmigneault
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  3. Merge branch 'job-io-extra-2' of https://github.com/crim-ca/weaver in… 

    …to job-io-extra-2
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  4. Merge branch 'master' into job-io-extra-2

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  5. resolve import runtime

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  6. fix reference to OpenAPI-3 CorniceSwagger implementation

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  7. add more openapi metadata

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  8. fix CWL schema requirements definition & test

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  9. add deprecated metadata of OpenAPI schemas for job result paths + red… 

    …irect them to job outputs (#86)
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Commits on Mar 5, 2021

  1. strict conformance to OGC-API results response content

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  2. fix OpenAPI additionalProperties generation combined with keyword map… 

    …ping
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  3. more schema fixes for generaeted OpenAPI

    @fmigneault
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  4. working openapi nested keyword definitions

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Commits on Mar 6, 2021

  1. resolve variable mapping schema resolution (deserialize) + working te… 

    …st deploy/execute full validation of builtin process 'jsonarray2netdef'
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  2. working functional test docker application deploy/execute as wps-rest… 

    …api/wps-xml/wps-json and deserialize schema validations
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  3. strict validation of CWL contents according to supported definitions … 

    …mapping with WPS
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Commits on Mar 8, 2021

  1. fix schema deserialize for empty container

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  2. fix jobs results & paging queries handling + requests caching per con… 

    …fig/headers
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  3. fix infinite wait without timeout on fallback urlopen request fetchin… 

    …g format
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  4. fix request tests vs caching settings

    @fmigneault
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Commits on Mar 9, 2021

  1. fix s3 bucket & format tests

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  2. fix schema deserialize for timestamps

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  3. catch read/connection-timeout on top of connection-error during reque… 

    …st-extra retries
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  4. fix schema validation of job links, job search filters and method not… 

    … allowed responses
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Commits on Mar 10, 2021

  1. [wip] debug failing validation of CWL type directly as {'id': '<type>'}

    @fmigneault
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  2. fix schema validation of minOccurs/maxOccurs + fix enum CWL type sche… 

    …ma definition
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  3. fix missing test mocked requests methods + fix keywords schema defaul… 

    …t + add schema descriptions
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Commits on Mar 11, 2021

  1. fix metadata schema resolution + fix schema class title inferrence fr… 

    …om class name + more schema descriptions
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  2. support schema anyOf for sub-schema-types as literal fields for proce… 

    …ss id as UUID/SLUG
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  3. better support 'discriminator' keyword in openapi generation

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  4. openapi caching + update missing=drop accept header

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  5. update conformance route (#53)

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  6. backport remove travis (commit a9a8f8e)

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  7. update requirements CWL notes (#104, #138, #154)

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  8. fix schema slug definition to handle underscores

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Commits on Mar 12, 2021

  1. fix schema generation using not keyword + document missing keyword ex… 

    …amples in docstring
    @fmigneault
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  2. fix tests wps-app

    @fmigneault
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  3. fix schemas to enforce string pattern/format validators + fix semver … 

    …pattern according to requirements
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  4. add schema string formats for remote/local file and s3 bucket references

    @fmigneault
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  5. fix anyof default resolution + more schema validation + tests deploy … 

    …all passing
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  6. patch proxy redirect test to avoid depending on weaver app using anot… 

    …her webtest-testapp
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  7. test to validate frontpage links + linting fixes

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Commits on Mar 13, 2021

  1. replace redoc by swagger-ui for readthedocs openapi display

    @fmigneault
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  2. linting fixes

    @fmigneault
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  3. add redoc endpoint + use redoc for readthedocs

    @fmigneault
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  4. add caching to openapi ui views

    @fmigneault
    fmigneault committed Mar 13, 2021
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  5. fix lint imports

    @fmigneault
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  6. fix indicated python-req version in setup

    @fmigneault
    fmigneault committed Mar 13, 2021
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  7. fix invalid links in docs

    @fmigneault
    fmigneault committed Mar 13, 2021
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  8. more doc fixes

    @fmigneault
    fmigneault committed Mar 13, 2021
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