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Use macos-latest runner instead of deprecated macos-12 #381

Use macos-latest runner instead of deprecated macos-12

Use macos-latest runner instead of deprecated macos-12 #381

Triggered via push December 6, 2024 10:26
Status Failure
Total duration 42m 43s
Artifacts
Matrix: run snakemake
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2 errors and 8 warnings
run snakemake (macos-latest)
Process completed with exit code 1.
run snakemake (macos-latest)
No such keg: /opt/homebrew/Cellar/[email protected]
run snakemake (macos-latest)
'nodefaults' channel detected: will remove 'defaults' if added implicitly. In the future, 'nodefaults' as a way of removing 'defaults' won't be supported. Please set 'conda-remove-defaults' = 'true' to remove this warning.
run snakemake (macos-latest)
/Users/runner/miniconda3/lib/python3.12/site-packages/conda/base/context.py:198: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.3. To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels: conda config --add channels defaults For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html deprecated.topic(
run snakemake (macos-latest)
pkgconf 2.3.0_1 is already installed and up-to-date. To reinstall 2.3.0_1, run: brew reinstall pkgconf
run snakemake (macos-latest)
HOMEBREW_NO_INSTALLED_DEPENDENTS_CHECK is set: not checking for outdated dependents or dependents with broken linkage!
run snakemake (macos-latest)
No files were found with the provided path: example_data/output/Rout/*.Rout. No artifacts will be uploaded.
run snakemake (ubuntu-latest)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
run snakemake (ubuntu-latest)
'nodefaults' channel detected: will remove 'defaults' if added implicitly. In the future, 'nodefaults' as a way of removing 'defaults' won't be supported. Please set 'conda-remove-defaults' = 'true' to remove this warning.
run snakemake (ubuntu-latest)
/home/runner/miniconda3/lib/python3.12/site-packages/conda/base/context.py:198: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.3. To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels: conda config --add channels defaults For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html deprecated.topic(