htdocs update (master)

about.html

@@ -145,6 +145,7 @@ <h2>Acknowledgements<a class="headerlink" href="#acknowledgements" title="Link t
 Tara Michels-Clark
 Tarik Drevon
 Yash Karan
+Marko Petrovic
 </pre></div>
 </div>
 <p>In addition, we acknowledge guidance and ideas gained through numerous

documentation/programs/dials_search_beam_position.html

@@ -59,10 +59,11 @@ <h2>Introduction<a class="headerlink" href="#introduction" title="Link to this h
 <p>Other methods are based on horizontal and vertical projection, and only
 require an imported experiment.</p>
 <dl class="simple">
-<dt>Examples:</dt><dd><p>dials.search_beam_position method=midpoint imported.exp
-dials.search_beam_position method=maximum imported.exp</p>
+<dt>Example:</dt><dd><p>dials.search_beam_position method=midpoint imported.exp</p>
 </dd>
 </dl>
+<p>More information about the projection methods can be found at
+<a class="reference external" href="https://autoed.readthedocs.io/en/latest/pages/beam_position_methods.html">https://autoed.readthedocs.io/en/latest/pages/beam_position_methods.html</a></p>
 </section>
 <section id="basic-parameters">
 <h2>Basic parameters<a class="headerlink" href="#basic-parameters" title="Link to this heading">¶</a></h2>
@@ -93,7 +94,7 @@ <h2>Basic parameters<a class="headerlink" href="#basic-parameters" title="Link t
   <span class="n">load_average_image</span> <span class="o">=</span> <span class="kc">False</span>
   <span class="n">color_cutoff</span> <span class="o">=</span> <span class="kc">None</span>
   <span class="n">midpoint</span> <span class="p">{</span>
-    <span class="n">exclude_intensity_percent</span> <span class="o">=</span> <span class="mi">0</span>
+    <span class="n">exclude_intensity_percent</span> <span class="o">=</span> <span class="mf">0.01</span>
     <span class="n">intersection_range</span> <span class="o">=</span> <span class="p">(</span><span class="mf">0.3</span><span class="p">,</span> <span class="mf">0.9</span><span class="p">,</span> <span class="mf">0.01</span><span class="p">)</span>
     <span class="n">convolution_width</span> <span class="o">=</span> <span class="mi">80</span>
     <span class="n">dead_pixel_range_x</span> <span class="o">=</span> <span class="kc">None</span>
@@ -219,8 +220,9 @@ <h2>Full parameter definitions<a class="headerlink" href="#full-parameter-defini
             <span class="s2">&quot;diffraction image.&quot;</span>
     <span class="o">.</span><span class="n">type</span> <span class="o">=</span> <span class="nb">float</span><span class="p">(</span><span class="n">allow_none</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
   <span class="n">midpoint</span> <span class="p">{</span>
-    <span class="n">exclude_intensity_percent</span> <span class="o">=</span> <span class="mi">0</span>
-      <span class="o">.</span><span class="n">help</span> <span class="o">=</span> <span class="s2">&quot;Set all pixels above this value to zero.&quot;</span>
+    <span class="n">exclude_intensity_percent</span> <span class="o">=</span> <span class="mf">0.01</span>
+      <span class="o">.</span><span class="n">help</span> <span class="o">=</span> <span class="s2">&quot;Order all pixels by intensity and discard this percentage from&quot;</span>
+              <span class="s2">&quot;the top (by setting them to zero).&quot;</span>
       <span class="o">.</span><span class="n">type</span> <span class="o">=</span> <span class="nb">float</span><span class="p">(</span><span class="n">allow_none</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
     <span class="n">intersection_range</span> <span class="o">=</span> <span class="p">(</span><span class="mf">0.3</span><span class="p">,</span> <span class="mf">0.9</span><span class="p">,</span> <span class="mf">0.01</span><span class="p">)</span>
       <span class="o">.</span><span class="n">help</span> <span class="o">=</span> <span class="s2">&quot;Compute midpoints in this range (start, end, step).&quot;</span>