v1.11.0
epi2melabs-bot
released this
12 Feb 22:36
·
244 commits
to master
since this release
Changed
- Add an additional
whatshap haplotag
process after the final VCF phasing. - Updates to the phasing subworkflow significantly impact the runtime and storage requirement for the workflow, as detailed here.
- Several performance improvements which should noticeably reduce the running time of the workflow
Fixed
- Updated the version of Straglr, which addresses the following:
- Repeats can now be called in RFC1
- Start position of called STRs is 1-based rather than 0-based
- VCF headers now match those in the
FORMAT
field
- Generate
allChromosomes.bed
usingsamtools faidx
index instead ofpyfaidx
, to avoid a KeyError - Inconsistent file ownership of bundled Clair3 model files which could lead to subuid errors in some environments