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v1.9.1
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@epi2melabs-bot epi2melabs-bot released this 06 Dec 21:11
· 286 commits to master since this release
v1.9.1
dfde912

Changed

  • ClinVar annotation of SVs has been temporarily removed due to not being correctly incorporated. SnpEff annotations are still produced as part of the final SV VCF.
  • New documentation

Removed

  • --annotation_threads parameter, as the SnpEff process does not support multithreading.

Fixed

  • Truncated SV VCF header generated from vcfsort.
  • sed crashing with I/O error in some instances.
  • Missing flagstats file in output directory.
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