v2.2.2

Changed

• Workflow emitting OPTIONAL_FILE in some cases.
• File format of alignment files created by the workflow can be explicitly controlled with --output_xam_fmt [bam|cram].
  • The default is CRAM to match existing behaviour, for BAM use --output_xam_fmt bam.
• Enable RUST_BACKTRACE to automatically provide improved log messages for modkit issues.

Removed

• JBrowse configuration as it is no longer supported.
• Unused merge_threads parameter.

Fixed

• "No such file or directory" error for SV tandem repeat BED when user has assets in /data/