v2.4.0

Added

• IGV configuration for the EPI2ME App includes the output VCF files.

Changed

• Emit indexes for the input reference, when generated by the workflow.
• Links to the reference genomes in the README now point to bgzip-compressed fasta files.
• Updated modkit to v0.3.3.
• Reconciled workflow with wf-template v5.2.5

Fixed

• ERROR ~ No such variable: colors when the workflow cannot find the reference file.
• Incorrect bin size unit in QDNAseq wrapper script help text (@HudoGriz, #209).
• minimap2 version missing from alignment report.
• Resume crashing in some processes due to pre-existing directories.
• Expose additional arguments for specific tools.
• Excessive memory usage for sample_probs process when using --mod leading to exit code 137.
• aggregate_pileup_variants and aggregate_full_align_variants processes occasionally crashing with exit code 137.