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sreichl authored Nov 6, 2024
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[![MR.PARETO](https://img.shields.io/badge/MR.PARETO-red)](https://github.com/epigen/mr.pareto/)
[![MrBiomics](https://img.shields.io/badge/MrBiomics-red)](https://github.com/epigen/MrBiomics/)
[![DOI](https://zenodo.org/badge/475465311.svg)](https://zenodo.org/badge/latestdoi/475465311)
[![](https://tokei.rs/b1/github/epigen/unsupervised_analysis?category=code)]()
[![](https://tokei.rs/b1/github/epigen/unsupervised_analysis?category=files)]()
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A general purpose [Snakemake 8](https://snakemake.readthedocs.io/en/stable/) workflow to perform unsupervised analyses (dimensionality reduction and cluster analysis) on and visualizations of high-dimensional data.

> [!NOTE]
> This workflow adheres to the module specifications of [MR.PARETO](https://github.com/epigen/mr.pareto), an effort to augment research by modularizing (biomedical) data science. For more details, instructions, and modules check out the project's repository.
> This workflow adheres to the module specifications of [MrBiomics](https://github.com/epigen/MrBiomics), an effort to augment research by modularizing (biomedical) data science. For more details, instructions, and modules check out the project's repository.
>
> ⭐️ **Star and share modules you find valuable** 📤 — help others discover them, and guide our focus for future work!
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- [Snakemake Workflow Catalog Entry](https://snakemake.github.io/snakemake-workflow-catalog?usage=epigen/unsupervised_analysis)

# 📚 Resources
- Recommended compatible [MR.PARETO Modules](https://github.com/epigen/mr.pareto/#-modules) for upstream analyses:
- Recommended compatible [MrBiomics Modules](https://github.com/epigen/MrBiomics/#-modules) for upstream analyses:
- [ATAC-seq Processing](https://github.com/epigen/atacseq_pipeline) to quantify chromatin accessibility.
- [scRNA-seq Data Processing & Visualization](https://github.com/epigen/scrnaseq_processing_seurat) for processing (multimodal) single-cell transcriptome data.
- [<ins>Sp</ins>lit, F<ins>ilter</ins>, Norma<ins>lize</ins> and <ins>Integrate</ins> Sequencing Data](https://github.com/epigen/spilterlize_integrate/) after count quantification.
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