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Implement new auto-process 'info' command Python CI #1300: Pull request #895 synchronize by pjbriggs
December 19, 2023 17:24 34m 19s add-info-command
add-info-command
December 19, 2023 17:24 34m 19s
'info' command: update to add run configuration information. Python CI #1299: Commit 153ec81 pushed by pjbriggs
December 19, 2023 17:24 33m 4s add-info-command
add-info-command
December 19, 2023 17:24 33m 4s
Implement new auto-process 'info' command Python CI #1298: Pull request #895 synchronize by pjbriggs
December 19, 2023 14:12 32m 56s add-info-command
add-info-command
December 19, 2023 14:12 32m 56s
'setup' command: also acquire and store 'run_configuration' metadata … Python CI #1297: Commit 80ab141 pushed by pjbriggs
December 19, 2023 14:12 33m 21s add-info-command
add-info-command
December 19, 2023 14:12 33m 21s
Implement new auto-process 'info' command Python CI #1296: Pull request #895 synchronize by pjbriggs
December 19, 2023 08:26 33m 14s add-info-command
add-info-command
December 19, 2023 08:26 33m 14s
'info' command: add bases mask & flow cell mode, and trap for bad dir… Python CI #1295: Commit dce83d0 pushed by pjbriggs
December 19, 2023 08:26 34m 38s add-info-command
add-info-command
December 19, 2023 08:26 34m 38s
Merge pull request #926 from fls-bioinformatics-core/setup-make-run-n… Python CI #1294: Commit 91b47a6 pushed by pjbriggs
December 19, 2023 08:06 34m 14s devel
devel
December 19, 2023 08:06 34m 14s
'setup' command: force specification of the facility run number Python CI #1293: Pull request #926 opened by pjbriggs
December 18, 2023 17:11 34m 35s setup-make-run-number-compulsory
setup-make-run-number-compulsory
December 18, 2023 17:11 34m 35s
'setup' command: make the -r/--run-number command line argument compu… Python CI #1292: Commit 3772bfb pushed by pjbriggs
December 18, 2023 17:09 32m 50s setup-make-run-number-compulsory
setup-make-run-number-compulsory
December 18, 2023 17:09 32m 50s
Merge pull request #925 from fls-bioinformatics-core/qc-pipeline-fix-… Python CI #1291: Commit 539f4f0 pushed by pjbriggs
December 18, 2023 16:22 32m 48s setup-make-run-number-compulsory
setup-make-run-number-compulsory
December 18, 2023 16:22 32m 48s
Update QC protocols for 10x Visium spatial GEX and PEX data Python CI #1290: Pull request #922 synchronize by pjbriggs
December 15, 2023 11:05 34m 14s 10x-visium-updates-for-gex-and-pex
10x-visium-updates-for-gex-and-pex
December 15, 2023 11:05 34m 14s
qc/protocols: implement new protocol for 10x Cytassist Visium PEX data. Python CI #1289: Commit 4a544d5 pushed by pjbriggs
December 15, 2023 11:05 33m 9s 10x-visium-updates-for-gex-and-pex
10x-visium-updates-for-gex-and-pex
December 15, 2023 11:05 33m 9s
Merge pull request #925 from fls-bioinformatics-core/qc-pipeline-fix-… Python CI #1288: Commit 539f4f0 pushed by pjbriggs
December 15, 2023 10:59 32m 40s devel
devel
December 15, 2023 10:59 32m 40s
Fix bug in QC pipeline if working dir is on different device to QC dir Python CI #1287: Pull request #925 opened by pjbriggs
December 15, 2023 10:07 35m 26s qc-pipeline-fix-cross-device-rename
qc-pipeline-fix-cross-device-rename
December 15, 2023 10:07 35m 26s
qc/pipeline: use shutil.move() in GetBAMFiles task, to avoid errors w… Python CI #1286: Commit ee63928 pushed by pjbriggs
December 14, 2023 17:06 34m 44s qc-pipeline-fix-cross-device-rename
qc-pipeline-fix-cross-device-rename
December 14, 2023 17:06 34m 44s
Update QC protocols for 10x Visium spatial GEX and PEX data Python CI #1285: Pull request #922 synchronize by pjbriggs
December 14, 2023 13:04 32m 47s 10x-visium-updates-for-gex-and-pex
10x-visium-updates-for-gex-and-pex
December 14, 2023 13:04 32m 47s
qc/protocols: implement new protocol for 10x Cytassist Visium PEX data. Python CI #1284: Commit 7c25a1c pushed by pjbriggs
December 14, 2023 13:04 36m 19s 10x-visium-updates-for-gex-and-pex
10x-visium-updates-for-gex-and-pex
December 14, 2023 13:04 36m 19s
Merge pull request #923 from fls-bioinformatics-core/run_qc.py-fix-de… Python CI #1283: Commit 392f9e9 pushed by pjbriggs
December 14, 2023 13:02 34m 10s devel
devel
December 14, 2023 13:02 34m 10s
run_qc.py: fix incorrect default for --split-fastqs-by-lane Python CI #1282: Pull request #923 synchronize by pjbriggs
December 14, 2023 12:08 32m 54s run_qc.py-fix-default-split-fqs-by-lane
run_qc.py-fix-default-split-fqs-by-lane
December 14, 2023 12:08 32m 54s
run_qc.py: add trap to fail if lane splitting requested for non-canon… Python CI #1281: Commit f8e7870 pushed by pjbriggs
December 14, 2023 12:08 32m 33s run_qc.py-fix-default-split-fqs-by-lane
run_qc.py-fix-default-split-fqs-by-lane
December 14, 2023 12:08 32m 33s
Update QC protocols for 10x Visium spatial GEX and PEX data Python CI #1280: Pull request #922 synchronize by pjbriggs
December 14, 2023 11:12 32m 59s 10x-visium-updates-for-gex-and-pex
10x-visium-updates-for-gex-and-pex
December 14, 2023 11:12 32m 59s
qc/protocols: implement new protocol for 10x Cytassist Visium PEX data. Python CI #1279: Commit 710eaa1 pushed by pjbriggs
December 14, 2023 11:12 32m 34s 10x-visium-updates-for-gex-and-pex
10x-visium-updates-for-gex-and-pex
December 14, 2023 11:12 32m 34s
run_qc.py: fix incorrect default for --split-fastqs-by-lane Python CI #1278: Pull request #923 opened by pjbriggs
December 13, 2023 17:39 32m 39s run_qc.py-fix-default-split-fqs-by-lane
run_qc.py-fix-default-split-fqs-by-lane
December 13, 2023 17:39 32m 39s
run_qc.py: fix incorrect default for --split-fastqs-by-lane (was alwa… Python CI #1277: Commit 95911a4 pushed by pjbriggs
December 13, 2023 17:08 34m 31s run_qc.py-fix-default-split-fqs-by-lane
run_qc.py-fix-default-split-fqs-by-lane
December 13, 2023 17:08 34m 31s
Update QC protocols for 10x Visium spatial GEX and PEX data Python CI #1276: Pull request #922 opened by pjbriggs
December 13, 2023 09:20 34m 55s 10x-visium-updates-for-gex-and-pex
10x-visium-updates-for-gex-and-pex
December 13, 2023 09:20 34m 55s
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