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use system temp files for temporary snf files #463

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ASLeonard
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Fairly minor change, but when running many samples (hundeds) at once over a reference with a modest amount of contigs (thousands), this can save generating hundreds of thousands of small files on cluster storage which tends to have worse IO than node-local storage.

There is also the new temp file for the snf merging, but that likely won't have the same IO pressure.

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