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Sniffles v2.2
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@lfpaulin lfpaulin released this 13 Jul 19:54
· 119 commits to master since this release
v2.2
31cf016

This release includes a number of updated implementation, bug fixes and usability improvements.

  • Low frequency SV caller mode --non-germline has been updated to --mosaic
  • Sniffles now allow SV on the same breakpoint
  • Minimum SV length is updated to 50 bases
  • Minimum mapping quality is set to 20 as default
  • Translocation events: require a minimum anchor on each chromosome of 1kb and there a strand check (--bnd-min-split-length and --qc-bnd-filter-strand)
  • We include a link to a Sniffles2 plotting tools: https://github.com/farhangus/sniffle2_plot
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