Skip to content

Issues: fulcrumgenomics/fgpyo

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

28 Open 47 Closed
28 Open 47 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Add a function to extract the sort order from an AlignmentHeader
#193 opened Nov 14, 2024 by msto
8
Drop support for Python 3.8 after EOL
#187 opened Sep 18, 2024 by msto
chore: remove the github-actions-ci environment
#180 opened Aug 15, 2024 by nh13
Metric.write should support alternate ordering of fields enhancement New feature or request
#177 opened Aug 14, 2024 by ameynert
1
Add a class/module method to read in a .dict file to a SequenceDictionary good first issue Good for newcomers help wanted Extra attention is needed
#176 opened Aug 12, 2024 by nh13
1
@TimD1
Should __get_item__() be reverted since it is confusing as to what the i-th entry of a Cigar is?
#169 opened Jul 20, 2024 by yfarjoun
1
inspect._get_parser() requires the now-deprecated typing.* collection types good first issue Good for newcomers
#143 opened Jun 12, 2024 by msto
1
Move code out of __init__.py and into {submodule}.py files
#136 opened Jun 12, 2024 by msto
7 tasks
Add require good first issue Good for newcomers
#132 opened Jun 6, 2024 by msto
1
Lock stdin/stdout so only one file handle may use either at a time
#131 opened Jun 6, 2024 by msto
Add code coverage report
#130 opened Jun 6, 2024 by msto
1
Use tox so we can test multiple python versions locally
#128 opened Jun 6, 2024 by msto
3
Add function(s) to set the 5' most alignment on a read as primary
#122 opened May 28, 2024 by msto
@msto
1
Metric should support comma-delimited files
#115 opened May 15, 2024 by msto
Metric should require decoration with dataclass or attr.s
#114 opened May 8, 2024 by msto
Consider renaming modules which shadow stdlib modules
#112 opened May 6, 2024 by msto
Add as_fastafile method to FastaBuilder good first issue Good for newcomers
#106 opened May 1, 2024 by msto
Metric wishlist
#104 opened Apr 17, 2024 by msto
2 of 6 tasks
4
Feature: SAM tag enum
#102 opened Mar 12, 2024 by msto
@msto
8
Feature request: UMI extraction from read name good first issue Good for newcomers
#92 opened Feb 21, 2024 by msto
@msto @emmcauley
Metric.read should support PEP 604 syntax for Optional types enhancement New feature or request
#89 opened Feb 9, 2024 by msto
1
@nh13
Add a method to calculate MD and NM tags. enhancement New feature or request good first issue Good for newcomers
#84 opened Dec 22, 2023 by nh13
@emmcauley
Add a method on Template to fixmate information enhancement New feature or request
#83 opened Dec 22, 2023 by nh13
1
@TimD1
Generate code for SamBuilder based on an input SAM/BAM enhancement New feature or request
#79 opened Nov 25, 2023 by nh13
Metric.read and Metric.write should be context managers
#70 opened Oct 27, 2023 by msto
1
ProTip! Mix and match filters to narrow down what you’re looking for.