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Pull requests: fulcrumgenomics/fgpyo

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Pull requests list

feat: secondary/supplementary alignments inherit from AuxAlignment
#208 opened Dec 31, 2024 by clintval • Draft
@tfenne
1
Add a class for parsing secondary alignments from XA/XB
#206 opened Dec 28, 2024 by clintval Loading…
@clintval
21
Add methods to fix mate info on non-primaries and templates
#204 opened Dec 27, 2024 by clintval Loading…
1
@nh13 @tfenne
19
Add a method for progress logging multiple alignments
#199 opened Dec 23, 2024 by clintval Loading…
@tfenne
11
ci: add CI support for python 3.13
#198 opened Dec 6, 2024 by nh13 • Draft
1
feat: overloaded 'SeqDict.from_sam()' method to support SAM files (#176)
#183 opened Sep 4, 2024 by TimD1 Loading…
1
@tfenne
6
feat: added template.fixmate() (#83)
#182 opened Sep 3, 2024 by TimD1 Loading…
1
@tfenne
5
feat: support metric custom column ordering and sub-setting
#178 opened Aug 14, 2024 by nh13 Loading…
1
@nh13
8
feat: support PEP604 syntax str | None
#168 opened Jul 19, 2024 by nh13 Loading…
1
@nh13
12
Adds support for running doctest as part of pytest
#161 opened Jul 16, 2024 by nh13 Loading…
@nh13
10
Added Alignment class good first issue Good for newcomers help wanted Extra attention is needed
#41 opened May 15, 2023 by jacarey Loading…
@nh13
17
Feature/ samtools typehinted wrappers help wanted Extra attention is needed
#26 opened Dec 27, 2022 by NatPRoach Loading…
1
@nh13 @TedBrookings
46
ProTip! Follow long discussions with comments:>50.