v3.0.1

What's Changed

• Update motile_toolbox version to v0.4.0 by @cmalinmayor in #117
• Use the segmentation label as the node id (toolbox v0.4.0) by @cmalinmayor in #119
• Bugfix: Allow using different time attribute in SolutionTracks by @cmalinmayor in #132
• Fix error when track id values are numpy floats by @cmalinmayor in #138

Full Changelog: v3.0.0...v3.0.1

v3.1.0-dev

What's Changed

• A now (hopefully) bug free version of the 3D orthogonal views and 3D clipping plane views with following functionalities:
  orthogonal views:

  • syncing of the layer mode (brush/fill/pipet/navigate/select/add etc)
  • syncing of the layer data and addition/moving new points by clicking/dragging (if no TrackLabels are present)
  • syncing visibility of nodes
  • syncing node color aesthetics (colormap highlights, border color, size)
  • syncing selected_label
  • syncing redo/undo
  • syncing selecting nodes by clicking
  • optional cross widget that centers on the selected node

  clipping planes:

  • define a clipping plane range with a QRangeSlider on an Image or Labels layer
  • if there are tracks, the visible nodes in the TrackLabels and PointLabels will be filtered according to the clipping range specified on the layer in the dropdown.

• a radiobutton group to choose between 'continue tracks' vs 'start new tracks' when tracking with points (only visible if there is no TrackLabels together with TrackPoints).

• simplified treewidget range updates: when updating the selection, it checks if all those nodes are still in view. If not, autoRange() is called (instead of setting a customized range for the selected nodes, which is often zoomed in too far and not helpful).

• If you click outside a label or point in the TrackLabels or TrackPoints layer, the selected_nodes are reset.

• when you export to CSV, the node color and lineage are also included. The lineage_id is defined as the track_id of the earliest known predecessor (using the get_lineage_id function in SolutionTracks).

• Update motile_toolbox version to v0.4.0 by @cmalinmayor in #117
• Use the segmentation label as the node id (toolbox v0.4.0) by @cmalinmayor in #119
• Bugfix: Allow using different time attribute in SolutionTracks by @cmalinmayor in #132

Full Changelog: v3.0.0...v3.1.0-dev

v3.0.0

What's Changed

• Ensure unique IDs in HeLa input labels by @cmalinmayor in #113
• Make the point size controllable by @AnniekStok in #115
• implement button to flip the tree view axes by @AnniekStok in #114
• Rename motile tracker by @cmalinmayor in #116

Full Changelog: v2.0.1...v3.0.0

v2.0.1

What's Changed

• Bugfix external tracks by @cmalinmayor in #104

Full Changelog: v2.0.0...v2.0.1

v2.0.0

What's Changed

• Add editing and refactor entire code base by @cmalinmayor in #86
• fix checkbox size in motile_widget and force tight spacing in editing menu by @AnniekStok in #87
• fix the label highlighting when scrolling in the time dimension by @AnniekStok in #88
• Bugfixes by @cmalinmayor in #89
• convert all graph data where necessary before saving to make it json serializable by @AnniekStok in #90

Full Changelog: v1.1.0...v2.0.0

v2.0.0-alpha

What's Changed

• Add editing and refactor entire code base by @cmalinmayor in #86

Full Changelog: v1.1.0...v2.0.0-alpha

v1.1.0

What's Changed

• ci: fix tests by @tlambert03 in #50
• Update docs with videos and longer descriptions by @cmalinmayor in #52
• Refactor tracks by @AnniekStok in #56
• Collapse gap plot by default by @cmalinmayor in #62
• 53 add lineage tree view by @cmalinmayor in #65
• save the scaling information in the motile_run and load it back in wh… by @AnniekStok in #67
• Add area to tree view by @cmalinmayor in #66
• Cleanup according to Talley's suggestions by @cmalinmayor in #68
• use the scaled coordinates from motile_toolbox by @AnniekStok in #69
• Update documentation with lineage tree info and remove outdated video from README by @AnniekStok in #70
• Import external tracks - add example script and documentation by @cmalinmayor in #71
• v1.1 cleanup by @cmalinmayor in #73

New Contributors

• @tlambert03 made their first contribution in #50
• @AnniekStok made their first contribution in #56

Full Changelog: v1.0.1...v1.1.0

v1.0.1

Fix autodeploy to pypi workflow
Full Changelog: v1.0.0...v1.0.1

v1.0.0

What's Changed

• Version 1.0 by @cmalinmayor in #46

Full Changelog: v0.2...v1.0.0

v0.2

Actually test github action to publish to pypi

What's Changed

• Update dependencies and build process by @cmalinmayor in #40

Full Changelog: v0.1...v0.2