v3.1.0-dev

What's Changed

• A now (hopefully) bug free version of the 3D orthogonal views and 3D clipping plane views with following functionalities:
  orthogonal views:

  • syncing of the layer mode (brush/fill/pipet/navigate/select/add etc)
  • syncing of the layer data and addition/moving new points by clicking/dragging (if no TrackLabels are present)
  • syncing visibility of nodes
  • syncing node color aesthetics (colormap highlights, border color, size)
  • syncing selected_label
  • syncing redo/undo
  • syncing selecting nodes by clicking
  • optional cross widget that centers on the selected node

  clipping planes:

  • define a clipping plane range with a QRangeSlider on an Image or Labels layer
  • if there are tracks, the visible nodes in the TrackLabels and PointLabels will be filtered according to the clipping range specified on the layer in the dropdown.

• a radiobutton group to choose between 'continue tracks' vs 'start new tracks' when tracking with points (only visible if there is no TrackLabels together with TrackPoints).

• simplified treewidget range updates: when updating the selection, it checks if all those nodes are still in view. If not, autoRange() is called (instead of setting a customized range for the selected nodes, which is often zoomed in too far and not helpful).

• If you click outside a label or point in the TrackLabels or TrackPoints layer, the selected_nodes are reset.

• when you export to CSV, the node color and lineage are also included. The lineage_id is defined as the track_id of the earliest known predecessor (using the get_lineage_id function in SolutionTracks).

• Update motile_toolbox version to v0.4.0 by @cmalinmayor in #117
• Use the segmentation label as the node id (toolbox v0.4.0) by @cmalinmayor in #119
• Bugfix: Allow using different time attribute in SolutionTracks by @cmalinmayor in #132

Full Changelog: v3.0.0...v3.1.0-dev