update to draft

ga4gh · Mar 1, 2024 · abe2f1c · abe2f1c
1 parent 1b7e52d
commit abe2f1c
Show file tree

Hide file tree

Showing 3 changed files with 39 additions and 39 deletions.
diff --git a/schema/gks.common-source.yaml b/schema/gks.common-source.yaml
@@ -42,7 +42,7 @@ $defs:
 
   Coding:
     type: object
-    maturity: Alpha
+    maturity: draft
     description: a concept codified by a terminology system.
     properties:
       label:
@@ -64,7 +64,7 @@ $defs:
   Mapping:
     type: object
     inherits: Entity
-    maturity: Alpha
+    maturity: draft
     description: >-
       A mapping to a concept in a terminology system.
     properties:
@@ -86,7 +86,7 @@ $defs:
 
   Extension:
     type: object
-    maturity: Alpha
+    maturity: draft
     description: >-
       The Extension class provides VODs with a means to extend descriptions
       with other attributes unique to a content provider. These extensions
@@ -106,7 +106,7 @@ $defs:
     required: [ "name" ]
 
   Code:
-    maturity: Alpha
+    maturity: draft
     description: >-
       Indicates that the value is taken from a set of controlled strings defined elsewhere.
       Technically, a code is restricted to a string which has at least one character and no leading or 
@@ -116,7 +116,7 @@ $defs:
     example: ENSG00000139618
 
   IRI:
-    maturity: Alpha
+    maturity: draft
     description: >-
       An IRI Reference (either an IRI or a relative-reference), according to `RFC3986 section 4.1 
       <https://datatracker.ietf.org/doc/html/rfc3986#section-4.1>` and `RFC3987 section 2.1
@@ -153,7 +153,7 @@ $defs:
 
   TraitSet:
     type: object
-    maturity: Alpha
+    maturity: draft
     description: >-
       A set of phenotype and/or disease concepts that together constitute a condition.
     inherits: Condition
@@ -176,7 +176,7 @@ $defs:
 
   Disease:
     type: object
-    maturity: Alpha
+    maturity: draft
     inherits: Condition
     description: >-
       A particular abnormal condition that negatively affects the structure or function 
@@ -190,7 +190,7 @@ $defs:
 
   Phenotype:
     type: object
-    maturity: Alpha
+    maturity: draft
     inherits: Condition
     description: >-
       An observable characteristic or trait of an organism.
@@ -214,7 +214,7 @@ $defs:
 
   TherapeuticAction:
     type: object
-    maturity: Alpha
+    maturity: draft
     inherits: TherapeuticProcedure
     description: >-
       A therapeutic action taken that is intended to alter or stop a pathologic
@@ -228,7 +228,7 @@ $defs:
 
   TherapeuticAgent:
     type: object
-    maturity: Alpha
+    maturity: draft
     inherits: TherapeuticProcedure
     description: >-
       An administered therapeutic agent that is intended to alter or stop a pathologic
@@ -242,7 +242,7 @@ $defs:
 
   CombinationTherapy:
     type: object
-    maturity: Alpha
+    maturity: draft
     inherits: TherapeuticProcedure
     description: >-
       A therapeutic procedure that involves multiple different therapeutic procedures 
@@ -269,7 +269,7 @@ $defs:
 
   TherapeuticSubstituteGroup:
     type: object
-    maturity: Alpha
+    maturity: draft
     inherits: TherapeuticProcedure
     description: >-
       A group of therapeutic procedures that may be treated as substitutes for one another.
@@ -294,7 +294,7 @@ $defs:
 
   Gene:
     inherits: DomainEntity
-    maturity: Alpha
+    maturity: draft
     description: >-
       A basic physical and functional unit of heredity.
     type: object

diff --git a/schema/gks.common.json b/schema/gks.common.json
@@ -5,7 +5,7 @@
    "$defs": {
       "Coding": {
          "type": "object",
-         "maturity": "Alpha",
+         "maturity": "draft",
          "description": "a concept codified by a terminology system.",
          "properties": {
             "label": {
@@ -33,7 +33,7 @@
       },
       "Mapping": {
          "type": "object",
-         "maturity": "Alpha",
+         "maturity": "draft",
          "description": "A mapping to a concept in a terminology system.",
          "properties": {
             "id": {
@@ -78,7 +78,7 @@
       },
       "Extension": {
          "type": "object",
-         "maturity": "Alpha",
+         "maturity": "draft",
          "description": "The Extension class provides VODs with a means to extend descriptions with other attributes unique to a content provider. These extensions are not expected to be natively understood under VRSATILE, but may be used for pre-negotiated exchange of message attributes when needed.",
          "properties": {
             "type": {
@@ -108,14 +108,14 @@
          "additionalProperties": false
       },
       "Code": {
-         "maturity": "Alpha",
+         "maturity": "draft",
          "description": "Indicates that the value is taken from a set of controlled strings defined elsewhere. Technically, a code is restricted to a string which has at least one character and no leading or  trailing whitespace, and where there is no whitespace other than single spaces in the contents.",
          "type": "string",
          "pattern": "\\S+( \\S+)*",
          "example": "ENSG00000139618"
       },
       "IRI": {
-         "maturity": "Alpha",
+         "maturity": "draft",
          "description": "An IRI Reference (either an IRI or a relative-reference), according to `RFC3986 section 4.1  <https://datatracker.ietf.org/doc/html/rfc3986#section-4.1>` and `RFC3987 section 2.1 <https://datatracker.ietf.org/doc/html/rfc3987#section-2.1>`. MAY be a JSON Pointer as an IRI fragment, as  described by `RFC6901 section 6 <https://datatracker.ietf.org/doc/html/rfc6901#section-6>`.",
          "type": "string",
          "format": "iri-reference"
@@ -136,7 +136,7 @@
       },
       "TraitSet": {
          "type": "object",
-         "maturity": "Alpha",
+         "maturity": "draft",
          "description": "A set of phenotype and/or disease concepts that together constitute a condition.",
          "properties": {
             "id": {
@@ -203,7 +203,7 @@
       },
       "Disease": {
          "type": "object",
-         "maturity": "Alpha",
+         "maturity": "draft",
          "description": "A particular abnormal condition that negatively affects the structure or function  of all or part of an organism and is not immediately due to any external injury.",
          "properties": {
             "id": {
@@ -254,7 +254,7 @@
       },
       "Phenotype": {
          "type": "object",
-         "maturity": "Alpha",
+         "maturity": "draft",
          "description": "An observable characteristic or trait of an organism.",
          "properties": {
             "id": {
@@ -322,7 +322,7 @@
       },
       "TherapeuticAction": {
          "type": "object",
-         "maturity": "Alpha",
+         "maturity": "draft",
          "description": "A therapeutic action taken that is intended to alter or stop a pathologic process.",
          "properties": {
             "id": {
@@ -373,7 +373,7 @@
       },
       "TherapeuticAgent": {
          "type": "object",
-         "maturity": "Alpha",
+         "maturity": "draft",
          "description": "An administered therapeutic agent that is intended to alter or stop a pathologic process.",
          "properties": {
             "id": {
@@ -424,7 +424,7 @@
       },
       "CombinationTherapy": {
          "type": "object",
-         "maturity": "Alpha",
+         "maturity": "draft",
          "description": "A therapeutic procedure that involves multiple different therapeutic procedures  performed in combination.",
          "properties": {
             "id": {
@@ -495,7 +495,7 @@
       },
       "TherapeuticSubstituteGroup": {
          "type": "object",
-         "maturity": "Alpha",
+         "maturity": "draft",
          "description": "A group of therapeutic procedures that may be treated as substitutes for one another.",
          "properties": {
             "id": {
@@ -562,7 +562,7 @@
          "additionalProperties": false
       },
       "Gene": {
-         "maturity": "Alpha",
+         "maturity": "draft",
          "description": "A basic physical and functional unit of heredity.",
          "type": "object",
          "properties": {

diff --git a/schema/gks.common.yaml b/schema/gks.common.yaml
@@ -4,7 +4,7 @@ type: object
 $defs:
   Coding:
     type: object
-    maturity: Alpha
+    maturity: draft
     description: a concept codified by a terminology system.
     properties:
       label:
@@ -25,7 +25,7 @@ $defs:
     additionalProperties: false
   Mapping:
     type: object
-    maturity: Alpha
+    maturity: draft
     description: A mapping to a concept in a terminology system.
     properties:
       id:
@@ -63,7 +63,7 @@ $defs:
     additionalProperties: false
   Extension:
     type: object
-    maturity: Alpha
+    maturity: draft
     description: The Extension class provides VODs with a means to extend descriptions
       with other attributes unique to a content provider. These extensions are not
       expected to be natively understood under VRSATILE, but may be used for pre-negotiated
@@ -89,7 +89,7 @@ $defs:
     - name
     additionalProperties: false
   Code:
-    maturity: Alpha
+    maturity: draft
     description: Indicates that the value is taken from a set of controlled strings
       defined elsewhere. Technically, a code is restricted to a string which has at
       least one character and no leading or  trailing whitespace, and where there
@@ -98,7 +98,7 @@ $defs:
     pattern: \S+( \S+)*
     example: ENSG00000139618
   IRI:
-    maturity: Alpha
+    maturity: draft
     description: An IRI Reference (either an IRI or a relative-reference), according
       to `RFC3986 section 4.1  <https://datatracker.ietf.org/doc/html/rfc3986#section-4.1>`
       and `RFC3987 section 2.1 <https://datatracker.ietf.org/doc/html/rfc3987#section-2.1>`.
@@ -114,7 +114,7 @@ $defs:
     - $ref: '#/$defs/TraitSet'
   TraitSet:
     type: object
-    maturity: Alpha
+    maturity: draft
     description: A set of phenotype and/or disease concepts that together constitute
       a condition.
     properties:
@@ -165,7 +165,7 @@ $defs:
     additionalProperties: false
   Disease:
     type: object
-    maturity: Alpha
+    maturity: draft
     description: A particular abnormal condition that negatively affects the structure
       or function  of all or part of an organism and is not immediately due to any
       external injury.
@@ -208,7 +208,7 @@ $defs:
     additionalProperties: false
   Phenotype:
     type: object
-    maturity: Alpha
+    maturity: draft
     description: An observable characteristic or trait of an organism.
     properties:
       id:
@@ -257,7 +257,7 @@ $defs:
     - $ref: '#/$defs/TherapeuticSubstituteGroup'
   TherapeuticAction:
     type: object
-    maturity: Alpha
+    maturity: draft
     description: A therapeutic action taken that is intended to alter or stop a pathologic
       process.
     properties:
@@ -299,7 +299,7 @@ $defs:
     additionalProperties: false
   TherapeuticAgent:
     type: object
-    maturity: Alpha
+    maturity: draft
     description: An administered therapeutic agent that is intended to alter or stop
       a pathologic process.
     properties:
@@ -341,7 +341,7 @@ $defs:
     additionalProperties: false
   CombinationTherapy:
     type: object
-    maturity: Alpha
+    maturity: draft
     description: A therapeutic procedure that involves multiple different therapeutic
       procedures  performed in combination.
     properties:
@@ -395,7 +395,7 @@ $defs:
     additionalProperties: false
   TherapeuticSubstituteGroup:
     type: object
-    maturity: Alpha
+    maturity: draft
     description: A group of therapeutic procedures that may be treated as substitutes
       for one another.
     properties:
@@ -447,7 +447,7 @@ $defs:
     - type
     additionalProperties: false
   Gene:
-    maturity: Alpha
+    maturity: draft
     description: A basic physical and functional unit of heredity.
     type: object
     properties: