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  1. GoingViral GoingViral Public

    GoingViral is a pipeline for the analysis of SISPA generated viral metagonomics reads. It's a configurable pipeline that performs multiple functions to generate clean viral metagenomics reads that …

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  3. Wisconsin-SARS-CoV-2 Wisconsin-SARS-CoV-2 Public

    Repository to store the most up to date code to Wisconsin Nextstrain builds

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  4. SARS-CoV-2_sequencing SARS-CoV-2_sequencing Public

    SARS-CoV-2 parallel sequencing by Illumina and Oxford Nanopore Technologies

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  5. SARS_CoV-2_Zequencer SARS_CoV-2_Zequencer Public

    Bioinformatics pipeline for analyzing SARS-CoV-2 tiled amplicon Illumina data

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  6. SARS-CoV-2-at-UW_Madison SARS-CoV-2-at-UW_Madison Public

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