Skip to content

Issues: genomic-medicine-sweden/nallo

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

95 Open 248 Closed
95 Open 248 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

ADD_MOST_SEVERE_CSQ error when using Sniffles1 as SV-caller bug Something isn't working
#605 opened Mar 6, 2025 by fellen31
Samplesheet validation: Mother is not specified as female. Effort M Effort Medium Gain M Gain Medium Urgency S Urgency Small
#599 opened Mar 5, 2025 by fellen31
Replace build_intervals with gawk nf-core module Effort M Effort Medium Gain M Gain Medium Urgency M Urgency Medium
#597 opened Mar 4, 2025 by fellen31
Samplesheet validation: parent does not exist in family Effort M Effort Medium Gain M Gain Medium Urgency S Urgency Small
#596 opened Mar 4, 2025 by fellen31
A "extra_vep_options" specifically for SV? enhancement New feature or request
#588 opened Mar 3, 2025 by A97paupic
3
Cram input Effort M Effort Medium Gain M Gain Medium Urgency S Urgency Small
#568 opened Feb 18, 2025 by fellen31
Add time and CPUh estimates to documentation Effort M Effort Medium enhancement New feature or request Gain M Gain Medium Urgency S Urgency Small
#567 opened Feb 18, 2025 by fellen31
1
Add somalier ancestry Effort M Effort Medium enhancement New feature or request Gain M Gain Medium Urgency M Urgency Medium
#564 opened Feb 17, 2025 by fellen31
Stranger not working for certain variants with multiple individuals per family bug Something isn't working
#562 opened Feb 13, 2025 by fellen31
2
@fellen31
1
Fix Nextflow language server issues Effort L Effort Large Gain L Gain Large Urgency M Urgency Medium
#528 opened Jan 15, 2025 by fellen31
Replace ADD_FOUND_IN_TAG with vcfexpress Effort M Effort Medium enhancement New feature or request Gain M Gain Medium Urgency M Urgency Medium
#527 opened Jan 15, 2025 by fellen31
1
Migrate to the new workflow output definitions Effort L Effort Large enhancement New feature or request Gain M Gain Medium Urgency S Urgency Small
#526 opened Jan 13, 2025 by fellen31
filter_vep is too slow and should be replaced Effort L Effort Large enhancement New feature or request Gain L Gain Large Urgency M Urgency Medium
#522 opened Jan 10, 2025 by fellen31
4
Add filtering to metro map Effort M Effort Medium Gain M Gain Medium Urgency S Urgency Small
#520 opened Jan 10, 2025 by fellen31
Samplesheet validation: Restrict characters in samplesheet Effort S Effort Small enhancement New feature or request Gain L Gain Large Urgency M Urgency Medium
#504 opened Nov 19, 2024 by fellen31 0.6
Finer-grained control over analysis regions Effort M Effort Medium enhancement New feature or request Gain L Gain Large Urgency M Urgency Medium
#503 opened Nov 14, 2024 by fellen31
Check for mismatches in columns when multiple files per sample are used Effort M Effort Medium enhancement New feature or request Gain L Gain Large Urgency M Urgency Medium
#500 opened Nov 12, 2024 by fellen31
Genmod annotate chromosome names missmatch for mitochondrial variants bug Something isn't working
#499 opened Nov 12, 2024 by fellen31
1 task done
1
Warn about restrictive PacBio License Effort S Effort Small enhancement New feature or request Gain M Gain Medium Urgency S Urgency Small
#497 opened Nov 8, 2024 by Schmytzi
1
Echtvar databases should not be required for SNV annotation Effort S Effort Small enhancement New feature or request Gain M Gain Medium Urgency M Urgency Medium
#494 opened Nov 7, 2024 by fellen31
Rank score penalty Effort M Effort Medium enhancement New feature or request Gain L Gain Large needs refinement This issue needs refinement Urgency M Urgency Medium
#492 opened Nov 6, 2024 by fellen31
[User Story] Consistent naming of pipeline subworkflows Effort M Effort Medium Gain L Gain Large Urgency M Urgency Medium user story a user story describing new functionality
#483 opened Nov 4, 2024 by fellen31
1 of 9 tasks
0.6
Add chromograph Effort M Effort Medium Gain L Gain Large Urgency M Urgency Medium
#482 opened Nov 4, 2024 by fellen31 0.6
Add STRdust Effort M Effort Medium Gain L Gain Large Urgency L Urgency Large
#481 opened Nov 4, 2024 by fellen31
2 tasks
0.6
Replace multisample test data with NIST trio Effort M Effort Medium Gain L Gain Large Urgency M Urgency Medium
#478 opened Nov 1, 2024 by fellen31 0.6
ProTip! no:milestone will show everything without a milestone.