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update installation steps
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Blazej Banaszewski committed Aug 5, 2024
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2 changes: 2 additions & 0 deletions README.md
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Expand Up @@ -26,7 +26,9 @@ For training a downstream model on the fingerprints see [`./notebooks/downstream
## Installation

### Pip
When used with cuda, use `nvcc --version` to see which version of the driver is installed on your machine, to select the wheel (cuXXX):
```
pip install torch-sparse torch-cluster torch-scatter -f https://pytorch-geometric.com/whl/torch-2.3.0+cu124.html
pip install minimol
```

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7 changes: 6 additions & 1 deletion notebooks/downstream_adaptation.ipynb
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Expand Up @@ -17,7 +17,12 @@
"metadata": {},
"outputs": [],
"source": [
"%pip install PyTDC"
"# change cuXXX to the cuda driver version installed on your machine\n",
"%pip install torch-sparse torch-cluster torch-scatter -f https://pytorch-geometric.com/whl/torch-2.3.0+cu121.html\n",
"%pip install hydra-core\n",
"%pip install graphium==2.4.7\n",
"%pip install minimol\n",
"%pip install pytdc"
]
},
{
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