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Added argument for specifying NetMHCIIpan/NetMHCIIpanEL version #1181

Merged
merged 9 commits into from
Feb 19, 2025
+6,639 −67
Merged

Added argument for specifying NetMHCIIpan/NetMHCIIpanEL version #1181

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355d67f
added argument for specifying NetMHCIIpan/NetMHCIIpanEL version
ldhtnp Jan 22, 2025
3aeb360
modified code to work when using standalone iedb
ldhtnp Jan 23, 2025
7b2897d
added tests for version specification
ldhtnp Jan 23, 2025
4074adf
added tests and suggestions
ldhtnp Jan 28, 2025
3ab10ce
fixed related iedb tests
ldhtnp Jan 29, 2025
886148b
Merge branch 'staging' of github.com:ldhtnp/pVACtools into issue-457
ldhtnp Jan 30, 2025
28e6dea
replaced try-except block
ldhtnp Feb 12, 2025
310e28d
added param to pvacfuse, updated docs
ldhtnp Feb 13, 2025
49a4685
Add newly supported NetMHCIIpan versions to the various Features docs…
susannasiebert Feb 19, 2025
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fixed related iedb tests
@ldhtnp
ldhtnp committed Jan 29, 2025
commit 3ab10ce8f3e2d4e1289ea2338246dba13da7ea0f
4 changes: 2 additions & 2 deletions tests/test_call_iedb.py
View file
Original file line number Diff line number Diff line change
@@ -219,7 +219,7 @@ def test_netmhciipan_method_with_version(self):

prediction_class = getattr(sys.modules[__name__], "NetMHCIIpan")
prediction_class_object = prediction_class()
NetMHCIIVersion.netmhcii_pan_version = '4.2'
NetMHCIIVersion.netmhciipan_version = '4.2'

(response_text, output_mode) = prediction_class_object.predict(
self.input_file,
@@ -247,7 +247,7 @@ def test_netmhciipan_el_method_with_version(self):

prediction_class = getattr(sys.modules[__name__], "NetMHCIIpanEL")
prediction_class_object = prediction_class()
NetMHCIIVersion.netmhcii_pan_version = '4.2'
NetMHCIIVersion.netmhciipan_version = '4.2'

(response_text, output_mode) = prediction_class_object.predict(
self.input_file,