Update AOP models #13

	name: Update AOP models

	on:
	workflow_dispatch:
	schedule:
	- cron: "0 7 13 * *"
	push:
	paths:
	- '*.groovy'

	jobs:
	bioschemas:
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v4
	with:
	submodules: true
	fetch-depth: 0

	- name: Install groovy
	run: sudo apt install groovy

	- name: Extract Bioschemas
	run: \|
	curl -H "Accept: text/csv" --data-urlencode query@sparql/aops.rq -G https://aopwiki.rdf.bigcat-bioinformatics.org/sparql -o aops.csv
	groovy createModels.groovy \| tee aops.ttl
	curl -H "Accept: text/csv" --data-urlencode query@sparql/kers.rq -G https://aopwiki.rdf.bigcat-bioinformatics.org/sparql -o kers.csv
	groovy createRelationships.groovy \| tee aopwiki-relationships.ttl

	- name: Commit Turtle
	run: \|
	git config --global user.name 'GitHub Action'
	git config --global user.email '[email protected]'
	git add *.ttl
	if git diff --exit-code --staged; then
	echo "No changes"
	else
	git commit -m 'Extracted new AOP models as Turtle'
	git push
	fi

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