imcf-fiji-scripts-6.5.0

Improvement

• 6d65c23: Only convert the highest resolution if a pyramidal file is used
• 253e56a: Save a log of the process, also made the output directory not optional
• 240f0bf: Fix print messages

Changes

• a16ecf8: Remove OME-TIFF2 as an option, renamed OME-TIFF1 to OME-TIFF
• f814600: Use ImarisConvertBioformats instead of Imaris for converting ICS/IDS files

Artifacts

• imcf-fiji-scripts-6.5.0.jar (on maven.scijava.org)

imcf-fiji-scripts-6.4.1

Fixes

• f767e90: Fix issue with saving path

Artifacts

• imcf-fiji-scripts-6.4.1.jar (on maven.scijava.org)

imcf-fiji-scripts-6.4.0

Changes

• 60cd6de: Allow for converting files with multiseries
• 543e395: Allow for channel splitting for downstream processing
• 559ca15: Output directory is no longer needed and will use same as input by default
• 5d98e75: Reworked saving as a function

Artifacts

• imcf-fiji-scripts-6.4.0.jar (on maven.scijava.org)

imcf-fiji-scripts-6.3.0

Changes

• 8b43ece: Allow for batch stitching by using Fiji batch button

Artifacts

• imcf-fiji-scripts-6.3.0.jar (on maven.scijava.org)

imcf-fiji-scripts-6.2.0

Changes

• 959bbe2: Add option to only output the registered TileConfiguration

Artifacts

• imcf-fiji-scripts-6.2.0.jar (on maven.scijava.org)

imcf-fiji-scripts-6.1.0

Changes

• d89f0ee: Swap the ImageJ macro for conversion to a new python one

Fixes

• 16fd3fa: Fix the github action cache
• da1828a: Update the scijava dependencies

Artifacts

• imcf-fiji-scripts-6.1.0.jar (on maven.scijava.org)

imcf-fiji-scripts-6.0.1

Changes

• 5c71fe0: Update scijava to latest version

Fixes

• 99e1f6a: Fix the address email to be optional
• 4a2b109: Fix issues with number sorting with different padding

Artifacts

• imcf-fiji-scripts-6.0.1.jar (on maven.scijava.org)

imcf-fiji-scripts-6.0.0

Changes

• e62a341: Rename the VSI stitching script to Stitch_Files_In_Directories
• f422de9: Remove the LSM stitching script

Artifacts

• imcf-fiji-scripts-6.0.0.jar (on maven.scijava.org)

imcf-fiji-scripts-5.3.1

Fixes

• 4732732: Fix issue with latest version of Imaris

Artifacts

• imcf-fiji-scripts-5.3.1.jar (on maven.scijava.org)

imcf-fiji-scripts-5.3.0

Changes

• New recursive_olympus_vsi_stitcher.py

Artifacts

• imcf-fiji-scripts-5.3.0.jar (on maven.scijava.org)