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Add synonym column to annotation property template #156

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Oct 24, 2023
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Add synonym column to annotation property template #156

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71a57b8
Add synonym column to template and INN synonym
cthoyt Oct 23, 2023
13403b2
Update annotation_properties.tsv
cthoyt Oct 23, 2023
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6 changes: 3 additions & 3 deletions src/templates/annotation_properties.tsv
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Original file line number Diff line number Diff line change
@@ -1,5 +1,5 @@
relation id (required) type label (required) definition (required) parent property contributon ORCID (required) Date created (required) example of use term tracker item
ID TYPE AT rdfs:label^^xsd:string AT IAO:0000115^^xsd:string SP % AI dc:contributor AT dc:created^^xsd:date AT IAO:0000112^^xsd:string AI IAO:0000233
relation id (required) type label (required) definition (required) parent property contributon ORCID (required) Date created (required) example of use term tracker item exact synonym
ID TYPE AT rdfs:label^^xsd:string AT IAO:0000115^^xsd:string SP % AI dc:contributor AT dc:created^^xsd:date AT IAO:0000112^^xsd:string AI IAO:0000233 AT oboInOwl:hasExactSynonym^^xsd:string
OMO:0003000 owl:AnnotationProperty abbreviation A synonym type for describing abbreviations or initalisms oboInOwl:SynonymType https://orcid.org/0000-0003-4423-4370 2023-03-03 CHEBI:26523 (reactive oxygen species) has an exact synonym (ROS), which is of type OMO:0003000 (abbreviation) https://github.com/information-artifact-ontology/ontology-metadata/issues/122
OMO:0003001 owl:AnnotationProperty ambiguous synonym A synonym type for describing ambiguous synonyms oboInOwl:SynonymType https://orcid.org/0000-0003-4423-4370 2023-03-03 https://github.com/information-artifact-ontology/ontology-metadata/issues/122
OMO:0003002 owl:AnnotationProperty dubious synonym A synonym type for describing dubious synonyms oboInOwl:SynonymType https://orcid.org/0000-0003-4423-4370 2023-03-03 https://github.com/information-artifact-ontology/ontology-metadata/issues/122
Expand All @@ -10,5 +10,5 @@ OMO:0003006 owl:AnnotationProperty misspelling A synonym type for common misspel
OMO:0003007 owl:AnnotationProperty misnomer A synonym type for misnomers, i.e., a synonym that is not technically correct but is commonly used anyway oboInOwl:SynonymType https://orcid.org/0000-0003-4423-4370 2023-03-03 https://github.com/information-artifact-ontology/ontology-metadata/issues/133
OMO:0003008 owl:AnnotationProperty previous name A synonym type for names that have been used as primary labels in the past. oboInOwl:SynonymType https://orcid.org/0000-0003-4423-4370 2023-07-25 MAPT, the gene that encodes the Tau protein, has a previous name DDPAC. Note: in this case, the name type is more specifically the gene symbol. https://github.com/information-artifact-ontology/ontology-metadata/issues/139
OMO:0003009 owl:AnnotationProperty legal name A synonym type for the legal entity name oboInOwl:SynonymType https://orcid.org/0000-0003-4423-4370 2023-07-27 The legal name for Harvard University (https://ror.org/03vek6s52) is President and Fellows of Harvard College https://github.com/information-artifact-ontology/ontology-metadata/issues/141
OMO:0003010 owl:AnnotationProperty International Nonproprietary Name The International Nonproprietary Name (INN) is a standardize name for a pharmaceutical drug or active ingredient issued by the World Health Organization (WHO) meant to address the issues with country- or language-specific brand names. These are issued in several languages, including English, Latin, French, Russian, Spanish, Arabic, and Chinese. oboInOwl:SynonymType https://orcid.org/0000-0003-4423-4370 2023-09-30 "CHEBI:46195 has been assigned the english International Nonproproprietary Name (INN) ""paracetamol"". In some cases such as this one, the INN might be the same as the ontology's primary label" https://github.com/information-artifact-ontology/ontology-metadata/issues/149
OMO:0003010 owl:AnnotationProperty International Nonproprietary Name The International Nonproprietary Name (INN) is a standardize name for a pharmaceutical drug or active ingredient issued by the World Health Organization (WHO) meant to address the issues with country- or language-specific brand names. These are issued in several languages, including English, Latin, French, Russian, Spanish, Arabic, and Chinese. oboInOwl:SynonymType https://orcid.org/0000-0003-4423-4370 2023-09-30 "CHEBI:46195 has been assigned the english International Nonproproprietary Name (INN) ""paracetamol"". In some cases such as this one, the INN might be the same as the ontology's primary label" https://github.com/information-artifact-ontology/ontology-metadata/issues/149 INN
OMO:0003011 owl:AnnotationProperty latin term A synonym type for describing Latin term synonyms. oboInOwl:SynonymType https://orcid.org/0000-0002-1773-2692 2023-10-12 nasopharynx (UBERON:0001728) has the latin name "pars nasalis pharyngis" https://github.com/information-artifact-ontology/ontology-metadata/issues/146
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