removed myelin mapping mask - redundant with ribbon

hippunfold/workflow/rules/myelin_map.smk

@@ -37,37 +37,6 @@ rule divide_t1_by_t2:
         "c3d {input.t1} {input.t2} -divide -replace inf 1000 -inf -1000 NaN 0 -o {output}"
 
 
-rule create_ribbon:
-    input:
-        ap_coord=bids(
-            root=work,
-            datatype="coords",
-            dir="AP",
-            label="{autotop}",
-            suffix="coords.nii.gz",
-            space="{space}",
-            desc="laplace",
-            hemi="{hemi}",
-            **inputs.subj_wildcards
-        ),
-    output:
-        ribbon=bids(
-            root=work,
-            datatype="anat",
-            label="{autotop}",
-            suffix="mask.nii.gz",
-            space="{space}",
-            desc="ribbon",
-            hemi="{hemi}",
-            **inputs.subj_wildcards
-        ),
-    group:
-        "subj"
-    container:
-        config["singularity"]["autotop"]
-    shell:
-        "c3d {input} -binarize -o {output}"
-
 
 # sample on hipp & dg midthickness surfaces
 rule sample_myelin_map_surf:
@@ -109,16 +78,6 @@ rule sample_myelin_map_surf:
             label="{autotop}",
             **inputs.subj_wildcards
         ),
-        ribbon=bids(
-            root=work,
-            datatype="anat",
-            label="{autotop}",
-            suffix="mask.nii.gz",
-            space="corobl",
-            desc="ribbon",
-            hemi="{hemi}",
-            **inputs.subj_wildcards
-        ),
     output:
         metric=bids(
             root=root,
@@ -134,4 +93,4 @@ rule sample_myelin_map_surf:
     container:
         config["singularity"]["autotop"]
     shell:
-        "wb_command -volume-to-surface-mapping {input.vol} {input.mid} {output.metric} -ribbon-constrained {input.outer} {input.inner} -volume-roi {input.ribbon}"
+        "wb_command -volume-to-surface-mapping {input.vol} {input.mid} {output.metric} -ribbon-constrained {input.outer} {input.inner}"