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updated bbhist url and added multihist7
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NOTE: multihist7 uses the legacy metric files (converted from previous
nifti to gifti, using the Snakefile in the zip), and ultimately should
be replaced by native giftis by running hippunfold v2 on those datasets
(once we have multi-atlas support)
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akhanf committed Jan 8, 2025
1 parent 46fe637 commit f76bba6
Showing 1 changed file with 4 additions and 5 deletions.
9 changes: 4 additions & 5 deletions hippunfold/config/snakebids.yml
Original file line number Diff line number Diff line change
Expand Up @@ -456,7 +456,7 @@ atlas_files:
- curvature

bbhist:
lut: sub-bbhist_labellist.txt
lut: desc-subfields_dseg.tsv
surf_gii: sub-bbhist_hemi-{hemi}_space-unfold_label-{label}_{surf_type}.surf.gii
metric_gii: sub-bbhist_hemi-{hemi}_space-corobl_label-{label}_{metric}.shape.gii
label_gii: sub-bbhist_hemi-{hemi}_space-corobl_label-{label}_desc-manual_subfields.label.gii
Expand Down Expand Up @@ -522,8 +522,7 @@ inject_template: upenn

template: CITI168

atlas:
- multihist7
atlas: multihist7



Expand All @@ -539,8 +538,8 @@ resource_urls:
synthseg_v0.1: 'zenodo.org/record/8184230/files/trained_model.3d_fullres.Task102_synsegGenDetailed.nnUNetTrainerV2.model_best.tar'
synthseg_v0.2: 'zenodo.org/record/8184230/files/trained_model.3d_fullres.Task203_synthseg.nnUNetTrainerV2.model_best.tar'
atlas:
bbhist: 'www.dropbox.com/scl/fi/aq59eggbrt719fs33q9t4/atlas-bbhist_20250108.zip?rlkey=vkf5jybhmummhboi8juc2zg2e&st=8y09t5zz&dl=0'
multihist7: 'files.ca-1.osf.io/v1/resources/v8acf/providers/osfstorage/65395b782827451220b86dd8/?zip='
bbhist: 'www.dropbox.com/scl/fi/fdqujkekhlzbnxsah5kqr/atlas-bbhist_20250108.zip?rlkey=dupo8jtwjynbdou6xmr736txt&st=aiaqzpri&dl=0'
multihist7: 'www.dropbox.com/scl/fi/g07u7la7v1kwfgsty6ujc/atlas-multihist7_20250108.zip?rlkey=bi7wbdsm93upgnn3bmlv4f1hx&st=5iv33isc&dl=0'
bigbrain: 'files.ca-1.osf.io/v1/resources/v8acf/providers/osfstorage/65395b8b13d27b123094c96f/?zip='
magdeburg: 'files.ca-1.osf.io/v1/resources/v8acf/providers/osfstorage/65395b8013d27b122f94c938/?zip='
freesurfer: 'files.ca-1.osf.io/v1/resources/v8acf/providers/osfstorage/65395b8513d27b123094c96a/?zip='
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