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Update to snakebids v0.12.x #486

Update to snakebids v0.12.x

Update to snakebids v0.12.x #486

Workflow file for this run

---
name: Lint and test workflow
on:
push:
branches: ['*', '!push-action/*']
pull_request:
branches: ['*', '!push-action/*']
jobs:
quality:
name: Lint code
if: github.event.pull_request.merged == false
runs-on: ubuntu-latest
steps:
- name: Setup Python environment
uses: khanlab/actions/.github/actions/[email protected]
with:
python-version: '3.10'
- name: yamlfix
run: poetry run poe yamlfix-check
- name: ruff
run: poetry run poe ruff-lint-check
- name: snakefmt
run: poetry run poe snakefmt-check
test:
runs-on: ubuntu-latest
needs: [quality]
strategy:
matrix:
python-version: ['3.8', '3.9', '3.10', '3.11']
steps:
- name: Setup Python environments
uses: khanlab/actions/.github/actions/[email protected]
with:
python-version: ${{ matrix.python-version }}
install-library: true
- name: Test minimum inputs
run: poetry run poe test_base
- name: Test freesurfer input
run: poetry run poe test_freesurfer
- name: Test responsemean input
run: poetry run poe test_responsemean
- name: Test dwi input
run: poetry run poe test_dwi
- name: Test custom labelmerge inputs
run: poetry run poe test_labelmerge
- name: Test using single atlas (skipping labelmerge)
run: poetry run poe test_skip_labelmerge
- name: Test sessions
run: poetry run poe test_sessions