Update to snakebids v0.12.x #486
Workflow file for this run
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--- | |
name: Lint and test workflow | |
on: | |
push: | |
branches: ['*', '!push-action/*'] | |
pull_request: | |
branches: ['*', '!push-action/*'] | |
jobs: | |
quality: | |
name: Lint code | |
if: github.event.pull_request.merged == false | |
runs-on: ubuntu-latest | |
steps: | |
- name: Setup Python environment | |
uses: khanlab/actions/.github/actions/[email protected] | |
with: | |
python-version: '3.10' | |
- name: yamlfix | |
run: poetry run poe yamlfix-check | |
- name: ruff | |
run: poetry run poe ruff-lint-check | |
- name: snakefmt | |
run: poetry run poe snakefmt-check | |
test: | |
runs-on: ubuntu-latest | |
needs: [quality] | |
strategy: | |
matrix: | |
python-version: ['3.8', '3.9', '3.10', '3.11'] | |
steps: | |
- name: Setup Python environments | |
uses: khanlab/actions/.github/actions/[email protected] | |
with: | |
python-version: ${{ matrix.python-version }} | |
install-library: true | |
- name: Test minimum inputs | |
run: poetry run poe test_base | |
- name: Test freesurfer input | |
run: poetry run poe test_freesurfer | |
- name: Test responsemean input | |
run: poetry run poe test_responsemean | |
- name: Test dwi input | |
run: poetry run poe test_dwi | |
- name: Test custom labelmerge inputs | |
run: poetry run poe test_labelmerge | |
- name: Test using single atlas (skipping labelmerge) | |
run: poetry run poe test_skip_labelmerge | |
- name: Test sessions | |
run: poetry run poe test_sessions |