Merge branch 'main' into feat/2258-edit-group-info

docs/package.json

@@ -18,7 +18,7 @@
         "astro": "^4.15.9",
         "prettier": "^3.3.3",
         "prettier-plugin-astro": "^0.14.1",
-        "prettier-plugin-tailwindcss": "^0.6.6",
+        "prettier-plugin-tailwindcss": "^0.6.8",
         "sharp": "^0.33.5",
         "tailwindcss": "^3.4.13",
         "typescript": "^5.6.2"

ena-submission/config/defaults.yaml

@@ -12,6 +12,7 @@ allowed_submission_hosts:
 time_between_iterations: 10
 min_between_github_requests: 2
 min_between_ena_checks: 5
+log_level: DEBUG
 #ena_checklist: ERC000033 - do not use until all fields are mapped to ENA accepted options
 metadata_mapping:
   'subject exposure':

ingest/config/defaults.yaml

@@ -2,7 +2,7 @@
 # Purpose is to keep the `values.yaml` config file clean
 nucleotide_sequences: ["main"]
 post_start_sleep: 0
-log_level: INFO
+log_level: DEBUG
 compound_country_field: ncbiGeoLocation
 fasta_id_field: genbankAccession
 keep:

keycloak/keycloakify/package.json

@@ -33,24 +33,24 @@
     "@storybook/addon-essentials": "^8.0.10",
     "@storybook/addon-interactions": "^8.0.10",
     "@storybook/addon-links": "^8.0.10",
-    "@storybook/addon-onboarding": "^8.3.0",
-    "@storybook/blocks": "^8.3.0",
+    "@storybook/addon-onboarding": "^8.3.4",
+    "@storybook/blocks": "^8.3.4",
     "@storybook/react": "^8.0.10",
-    "@storybook/react-vite": "^8.3.0",
-    "@storybook/test": "^8.3.0",
-    "@types/react": "^18.3.5",
+    "@storybook/react-vite": "^8.3.4",
+    "@storybook/test": "^8.3.4",
+    "@types/react": "^18.3.10",
     "@types/react-dom": "^18.3.0",
-    "@typescript-eslint/eslint-plugin": "^8.5.0",
-    "@typescript-eslint/parser": "^8.5.0",
-    "@vitejs/plugin-react": "^4.3.1",
-    "eslint": "^9.10.0",
+    "@typescript-eslint/eslint-plugin": "^8.8.0",
+    "@typescript-eslint/parser": "^8.8.0",
+    "@vitejs/plugin-react": "^4.3.2",
+    "eslint": "^9.11.1",
     "eslint-plugin-react-hooks": "^4.6.2",
     "eslint-plugin-react-refresh": "^0.4.12",
-    "eslint-plugin-storybook": "^0.8.0",
-    "storybook": "^8.3.0",
+    "eslint-plugin-storybook": "^0.9.0",
+    "storybook": "^8.3.4",
     "typescript": "^5.4.5",
-    "vite": "^5.4.6",
-    "vite-plugin-commonjs": "^0.10.1"
+    "vite": "^5.4.8",
+    "vite-plugin-commonjs": "^0.10.3"
   },
   "_comment": "See https://github.com/storybookjs/storybook/issues/22431#issuecomment-1630086092",
   "browserslist": {