Add https://github.com/enasequence/webin-cli/tree/7.3.1 to ena-submis…

…sion docker file.

ena-submission/Dockerfile

@@ -1,5 +1,14 @@
 FROM mambaorg/micromamba:1.5.8
 
+# Install dependencies needed for webin-cli
+USER root
+RUN apt-get update && apt-get install -y \
+    default-jre \
+    wget \
+    && rm -rf /var/lib/apt/lists/*
+RUN mkdir -p /package
+USER $MAMBA_USER
+
 COPY --chown=$MAMBA_USER:$MAMBA_USER environment.yml /tmp/env.yaml
 COPY --chown=$MAMBA_USER:$MAMBA_USER .mambarc /tmp/.mambarc
 
@@ -10,6 +19,11 @@ RUN micromamba config set extract_threads 1 \
 # Set the environment variable to activate the conda environment
 ARG MAMBA_DOCKERFILE_ACTIVATE=1
 
-COPY --chown=$MAMBA_USER:$MAMBA_USER . /package
 
+ENV WEBIN_CLI_VERSION 7.3.1
+USER root
+RUN wget -q "https://github.com/enasequence/webin-cli/releases/download/${WEBIN_CLI_VERSION}/webin-cli-${WEBIN_CLI_VERSION}.jar" -O /package/webin-cli.jar
+USER $MAMBA_USER
+
+COPY --chown=$MAMBA_USER:$MAMBA_USER . /package
 WORKDIR /package