improve try catch

loculus-project · Oct 4, 2024 · 8a2ecac · 8a2ecac
1 parent 33675f4
commit 8a2ecac
Showing 1 changed file with 9 additions and 9 deletions.
diff --git a/ena-submission/scripts/create_assembly.py b/ena-submission/scripts/create_assembly.py
@@ -345,16 +345,16 @@ def assembly_table_create(
             error_msg = f"Entry {row["accession"]} not found in project_table"
             raise RuntimeError(error_msg)
 
-        manifest_object = create_manifest_object(
-            config,
-            results_in_sample_table[0],
-            results_in_project_table[0],
-            sample_data_in_submission_table[0],
-            seq_key,
-            group_key,
-            test,
-        )
         try:
+            manifest_object = create_manifest_object(
+                config,
+                results_in_sample_table[0],
+                results_in_project_table[0],
+                sample_data_in_submission_table[0],
+                seq_key,
+                group_key,
+                test,
+            )
             manifest_file = create_manifest(manifest_object)
         except Exception as e:
             logger.error(f"Manifest creation failed for accession {row["accession"]} with error {e}")