Update silo_import_job.sh

test2
loculus-project · Sep 11, 2024 · b2244d8 · b2244d8
1 parent 2e7e765
commit b2244d8
Showing 1 changed file with 2 additions and 3 deletions.
diff --git a/kubernetes/loculus/silo_import_job.sh b/kubernetes/loculus/silo_import_job.sh
@@ -37,9 +37,8 @@ download_data() {
   exit_code=$?
   set -e
 
-  c=`tail -c 2 $new_input_data`
-  if [ "$c" != "" ]; then
-      echo "No 2 newlines at end of $new_input_data, instead $c, stream not completed, cleaning up and exiting"
+  if [ -s "$new_input_data" ] && tail -c2 "$new_input_data" | od -An -t x1 | grep -q "0a 0a"; then
+      echo "No 2 newlines at end of $new_input_data, stream not completed, cleaning up and exiting"
       rm -rf "$new_input_data_dir"
       exit $exit_code
   fi