Fixup renames (#714)

* Fix argocd updater

* Update appset.yaml

* rename preview to loculus

* update

.github/workflows/e2e-k3d.yml

@@ -32,7 +32,7 @@ jobs:
     - name: Test helm template
       uses: WyriHaximus/github-action-helm3@v3
       with:
-        exec: helm template does-not-matter ./kubernetes/preview > defaultTemplate.yaml
+        exec: helm template does-not-matter ./kubernetes/loculus > defaultTemplate.yaml
 
     - name: Upload default helm template
       uses: actions/upload-artifact@v4

.github/workflows/update-argocd-metadata.yml

@@ -40,7 +40,7 @@ jobs:
     - name: Checkout External Repository
       uses: actions/checkout@v4
       with:
-        repository: 'loculus/argocd_metadata'
+        repository: 'pathoplexus/argocd_metadata'
         token: ${{ secrets.ARGOCD_METADATA_PAT }}
 
     - name: Modify config.json

README.md

@@ -9,7 +9,7 @@ Detailed documentation is available in each folder's README. This file contains
 - Sequence and metadata processing pipeline is in [`preprocessing`](/preprocessing) folder, see [`preprocessing/specification.md`](/preprocessing/specification.md) 
 - Deployment code is in `kubernetes`, see [`kubernetes/README.md`](/kubernetes/README.md).
   Check this for local development setup instructions.
-- Authorization is performed by our own keycloak instance. see config in [`keycloak-image`](kubernetes/preview/templates/keycloak-deployment.yaml) and [`realm-config`](kubernetes/preview/templates/keycloak-config-map.yaml)
+- Authorization is performed by our own keycloak instance. see config in [`keycloak-image`](kubernetes/loculus/templates/keycloak-deployment.yaml) and [`realm-config`](kubernetes/loculus/templates/keycloak-config-map.yaml)
 
 ## GitHub Actions
 

deploy.py

@@ -10,7 +10,7 @@
 
 CLUSTER_NAME = 'testCluster'
 HELM_RELEASE_NAME = 'preview'
-HELM_CHART_DIR = ROOT_DIR / 'kubernetes' / 'preview'
+HELM_CHART_DIR = ROOT_DIR / 'kubernetes' / 'loculus'
 
 WEBSITE_PORT_MAPPING = '-p 3000:30081@agent:0'
 BACKEND_PORT_MAPPING = '-p 8079:30082@agent:0'

generate_local_test_config.sh

@@ -3,7 +3,7 @@
 set -e
 
 root="$( cd "$( dirname "${BASH_SOURCE[0]}" )" >/dev/null 2>&1 && pwd )"
-helmChart="$root"/kubernetes/preview
+helmChart="$root"/kubernetes/loculus
 
 backend_config="$root"/website/tests/config/backend_config.json
 helm template name-does-not-matter "$helmChart" --show-only templates/loculus-backend-config.yaml | \

kubernetes/appset.yaml

@@ -9,7 +9,7 @@ spec:
   generators:
     - pullRequest:
         github:
-          owner: loculus
+          owner: pathoplexus
           labels:
             - preview
           repo: loculus
@@ -32,7 +32,7 @@ spec:
         namespace: 'preview-{{ (printf "%.25s" .branch) | replace "_" "-" | trimSuffix "-" | lower  }}'
       project: default
       source:
-        path: 'kubernetes/preview/'
+        path: 'kubernetes/loculus/'
         repoURL: 'https://github.com/pathoplexus/loculus.git'
         targetRevision: '{{.branch}}'
         helm: