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Rename instances to organisms and more #1209

Merged
merged 5 commits into from
Mar 1, 2024
Merged

Rename instances to organisms and more #1209

merged 5 commits into from
Mar 1, 2024

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theosanderson
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@theosanderson theosanderson commented Mar 1, 2024

resolves #1026 and more

preview URL: https://organism.loculus.org/

Summary

This PR makes two changes:

  • it renames instances in helm Values to organisms, in line with our nomenclature. This was a backlog item.
  • it renames the organisms in the default Values.yaml to defaultOrganisms. It only uses this if organisms is unset. Without this, if we make a new instance and set organisms appropriately, the dummy-organism, etc., gets added in too. It would be nice to do this with helm templates but I couldn't make that work.

@theosanderson theosanderson added the preview Triggers a deployment to argocd label Mar 1, 2024
@theosanderson theosanderson changed the title wip: rename instances to organisms and more Rename instances to organisms and more Mar 1, 2024
@theosanderson theosanderson merged commit ed8e4eb into main Mar 1, 2024
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@theosanderson theosanderson deleted the organism branch March 1, 2024 17:52
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Rename instances to organisms in Values.yaml
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