Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

feat(website): Remove NCBI completeness #2260

Merged
merged 1 commit into from
Jul 8, 2024
+0 −10
Merged

feat(website): Remove NCBI completeness #2260

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
1 commit
Select commit
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
4 changes: 0 additions & 4 deletions ingest/config/defaults.yaml
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -13,7 +13,6 @@ keep:
- insdc_version
- bioprojects
- biosample_accession
- ncbi_completeness
- ncbi_host_name
- ncbi_host_tax_id
- ncbi_is_lab_host
Expand Down Expand Up @@ -63,7 +62,6 @@ shared_fields:
segment_specific_fields:
- biosample_accession # Should usually be same for each segment
- bioproject_accessions # Should usually be same for each segment?
- ncbi_completeness
- sra_run_accession # Usually the same for each segment?
- ncbi_protein_count
- insdc_accession_base
Expand Down Expand Up @@ -123,7 +121,6 @@ column_mapping:
Accession: genbank_accession
BioProjects: bioprojects
BioSample accession: biosample_accession
Completeness: ncbi_completeness
Gene count: ncbi_gene_count
Geographic Location: ncbi_geo_location
Geographic Region: ncbi_geo_region
Expand All @@ -147,7 +144,6 @@ column_mapping:
Lab Host: ncbi_lab_host
Mature peptide count: ncbi_mature_peptide_count
Molecule type: ncbi_mol_type
Nucleotide completeness: ncbi_nucleotide_completeness
Protein count: ncbi_protein_count
Purpose of Sampling: ncbi_purpose_of_sampling
Release date: ncbi_release_date
Expand Down
6 changes: 0 additions & 6 deletions kubernetes/loculus/values.yaml
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -576,12 +576,6 @@ defaultOrganismConfig: &defaultOrganismConfig
- name: diagnostic_measurement_unit
displayName: Diagnostic measurement unit
header: Diagnostics
- name: ncbi_completeness
generateIndex: true
autocomplete: true
header: "INSDC"
noInput: true
perSegment: true
- name: length
type: int
header: "Alignment states and QC metrics"
Expand Down
Loading