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chore: update to LAPIS 0.3.4, SILO 0.2.22 #2934

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merged 3 commits into from
Oct 7, 2024
+14 −14
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chore: update to LAPIS 0.3.4, SILO 0.2.22 #2934

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d5713d7
chore(kubernetes): update to SILO 0.2.22
fengelniederhammer Oct 2, 2024
794c5d5
chore(kubernetes): update to LAPIS 0.3.4
fengelniederhammer Oct 2, 2024
dc1de4d
refactor(kubernetes): reorder Loculus internal metadata to group rela…
fengelniederhammer Oct 7, 2024
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24 changes: 12 additions & 12 deletions kubernetes/loculus/templates/_common-metadata.tpl
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Original file line number Diff line number Diff line change
Expand Up @@ -14,6 +14,10 @@
{{/* Get common metadata fields */}}
{{- define "loculus.commonMetadata" }}
fields:
- name: accessionVersion
type: string
notSearchable: true
hideOnSequenceDetailsPage: true
- name: accession
type: string
notSearchable: true
Expand All @@ -26,10 +30,6 @@ fields:
displayName: Submission ID
type: string
header: Submission details
- name: accessionVersion
type: string
notSearchable: true
hideOnSequenceDetailsPage: true
- name: isRevocation
type: boolean
notSearchable: true
Expand Down Expand Up @@ -91,14 +91,6 @@ fields:
displayName: Data use terms restricted until
hideOnSequenceDetailsPage: true
header: Data use terms
- name: versionStatus
type: string
notSearchable: true
hideOnSequenceDetailsPage: true
- name: versionComment
type: string
displayName: Version comment
header: Submission details
{{- if $.Values.dataUseTermsUrls }}
- name: dataUseTermsUrl
displayName: Data use terms URL
Expand All @@ -109,6 +101,14 @@ fields:
type: link
url: "__value__"
{{- end}}
- name: versionStatus
type: string
notSearchable: true
hideOnSequenceDetailsPage: true
- name: versionComment
type: string
displayName: Version comment
header: Submission details
{{- end}}

{{/* Patches schema by adding to it and overwriting overlapping fields by the value in metadataAdd*/}}
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4 changes: 2 additions & 2 deletions kubernetes/loculus/values.yaml
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Expand Up @@ -1442,8 +1442,8 @@ insecureCookies: false
bannerMessage: "This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly."
additionalHeadHTML: '<script defer data-domain="loculus.org" src="https://plausible.io/js/script.js"></script>'
images:
lapisSilo: "ghcr.io/genspectrum/lapis-silo:0.2.17"
lapis: "ghcr.io/genspectrum/lapis:0.3.1"
lapisSilo: "ghcr.io/genspectrum/lapis-silo:0.2.22"
lapis: "ghcr.io/genspectrum/lapis:0.3.4"
secrets:
smtp-password:
type: raw
Expand Down
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