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fix(ena-submission): temporarily do not send gcaAccession to Loculus #2946

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merged 2 commits into from
Oct 4, 2024

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@anna-parker anna-parker commented Oct 4, 2024

workaround until we figure out #2945

preview URL: https://tempfixes.loculus.org or https://temp-fixes.loculus.org

Summary

The ena-submission pipeline is failing to upload external metadata because it is uploading a gcaAccession field which is currently missing from the config.yaml.

Adding new metadata fields currently causes issues (this might be helped by addressing #2793), until these can be resolved we temporarily do not upload the gcaAccession to Loculus.

This PR also fixes an unrelated little bug in the dry-run script.

Screenshot

PR Checklist

  • All necessary documentation has been adapted.
  • The implemented feature is covered by an appropriate test.

@anna-parker anna-parker changed the title temporarily fix gcaAccession fix(ena-submission): temporarily fix gcaAccession Oct 4, 2024
@anna-parker anna-parker changed the title fix(ena-submission): temporarily fix gcaAccession fix(ena-submission): temporarily do not send gcaAccession to Loculus Oct 4, 2024
@corneliusroemer corneliusroemer added the preview Triggers a deployment to argocd label Oct 4, 2024
@corneliusroemer corneliusroemer added this to the Priority 1 (highest) milestone Oct 4, 2024
@corneliusroemer corneliusroemer merged commit 231e3e2 into main Oct 4, 2024
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@corneliusroemer corneliusroemer deleted the temp_fixes branch October 4, 2024 08:49
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2 participants