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  • UNC Chapel Hill
  • Chapel Hill, NC

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Starred repositories

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a streamlining post Spectronaut™ DIA-MS data analysis R package

R 5 1 Updated Feb 14, 2025

The Kinase Library: a Global Atlas of the Human Protein Kinome

Jupyter Notebook 7 Updated Feb 3, 2025

Web application for performing RoKAI through an online interface, implemented in R shiny.

R 3 Updated Jul 30, 2024

A package for pathway analysis in experiments with multiple perturbation designs.

R 1 3 Updated Nov 14, 2023

A 'ggplot2' Extension for Consistent Axis Alignment

R 263 8 Updated Mar 1, 2025

Training materials for a Nextflow beginners workshop 2024

Shell 3 3 Updated Oct 24, 2024

R package to infer biological activities from omics data using a collection of methods.

R 226 24 Updated Feb 14, 2025

mm_convert

Python 3 2 Updated Dec 18, 2024

motifeR package

R 8 1 Updated Jan 26, 2024

Shell scripts for running Fragpipe on a HPC, using Singularity containers.

Shell 3 2 Updated Jan 30, 2023

An R interface to the MEME Suite

R 49 5 Updated Oct 7, 2024

PTMoreR enables a motif-centric proteomic mapping and annotation of post-translational modifications across mammalian species

R 2 Updated Feb 14, 2025

Analyse sage results in R

R 3 Updated Mar 12, 2024

A python interface to the SAGE search engine for mass spectrometry proteomics

Rust 12 1 Updated Feb 28, 2025

A collection of available Python tools for Proteomics analysis

52 12 Updated May 4, 2019

Random Walk on Heterogeneous Network For Functional Analysis of Phosphoproteomics Data

R 1 Updated Jan 24, 2022

MS-DAP: downstream analysis pipeline for quantitative proteomics

R 32 7 Updated Feb 27, 2025

Methods for label-free mass spectrometry proteomics

R 14 Updated Feb 28, 2025

Programming with Python

Python 306 783 Updated Feb 27, 2025

Your Journey To Fluent Python

Python 1,114 74 Updated Jun 27, 2024

Peptide-MHC I binding affinity prediction

Python 199 59 Updated Nov 18, 2024

Automatically exported from code.google.com/p/cdhit

Perl 655 130 Updated Oct 11, 2022

AA_stat tool is for searching uncovering the unexpected modifications of amino acid residues in the protein sequences, as well as possible artifacts of data acquisition or processing, in the result…

Python 6 5 Updated Nov 19, 2024

An open-source Python package to unify raw MS data accession and storage.

Jupyter Notebook 20 5 Updated Feb 18, 2025

Adds multiprocessing capabilities to Pandas to parallelize apply operations on DataFrames, Series and DataFrameGroupBy

Python 76 12 Updated Jul 11, 2023

Ursgal - universal Python module combining common bottom-up proteomics tools for large-scale analysis

Python 41 32 Updated Feb 1, 2025

QCloud2 pipeline

Nextflow 5 1 Updated Feb 20, 2025

Protein Cleaver is a versatile tool for protein analysis and digestion.

Python 3 1 Updated Mar 28, 2024

Toolbox for Kinase Activity Scoring based on phosphoproteomic data

Python 10 3 Updated Nov 17, 2020

Course materials for basic programming in drug discovery

Jupyter Notebook 4 3 Updated Feb 8, 2019
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