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a streamlining post Spectronaut™ DIA-MS data analysis R package
The Kinase Library: a Global Atlas of the Human Protein Kinome
Web application for performing RoKAI through an online interface, implemented in R shiny.
A package for pathway analysis in experiments with multiple perturbation designs.
Training materials for a Nextflow beginners workshop 2024
R package to infer biological activities from omics data using a collection of methods.
Shell scripts for running Fragpipe on a HPC, using Singularity containers.
PTMoreR enables a motif-centric proteomic mapping and annotation of post-translational modifications across mammalian species
A python interface to the SAGE search engine for mass spectrometry proteomics
A collection of available Python tools for Proteomics analysis
Random Walk on Heterogeneous Network For Functional Analysis of Phosphoproteomics Data
MS-DAP: downstream analysis pipeline for quantitative proteomics
Methods for label-free mass spectrometry proteomics
Programming with Python
Your Journey To Fluent Python
Automatically exported from code.google.com/p/cdhit
AA_stat tool is for searching uncovering the unexpected modifications of amino acid residues in the protein sequences, as well as possible artifacts of data acquisition or processing, in the result…
An open-source Python package to unify raw MS data accession and storage.
Adds multiprocessing capabilities to Pandas to parallelize apply operations on DataFrames, Series and DataFrameGroupBy
Ursgal - universal Python module combining common bottom-up proteomics tools for large-scale analysis
Protein Cleaver is a versatile tool for protein analysis and digestion.
Toolbox for Kinase Activity Scoring based on phosphoproteomic data
Course materials for basic programming in drug discovery
