Allow multiple snp_transcripts in plot_diplotype_clustering_advanced()
#1397
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name: notebooks | |
on: | |
push: | |
branches: | |
- master | |
pull_request: | |
branches: | |
- master | |
jobs: | |
notebooks: | |
strategy: | |
fail-fast: true | |
runs-on: ubuntu-latest | |
# Add "id-token" with the intended permissions. | |
permissions: | |
contents: 'read' | |
id-token: 'write' | |
steps: | |
- name: Checkout source | |
uses: actions/checkout@v4 | |
- name: Setup python | |
uses: actions/setup-python@v5 | |
with: | |
python-version: "3.12" | |
cache: "pip" | |
- name: Install package | |
run: pip install .[dev] | |
- id: 'auth' | |
name: 'Set up Google Cloud authentication' | |
uses: 'google-github-actions/auth@v2' | |
with: | |
credentials_json: '${{ secrets.GOOGLE_CREDENTIALS }}' | |
- name: 'Set up Google Cloud SDK' | |
uses: 'google-github-actions/setup-gcloud@v2' | |
with: | |
version: '>= 363.0.0' | |
- name: 'Check gcloud CLI' | |
run: 'gcloud info' | |
- name: Restore GCS cache | |
uses: actions/cache/restore@v3 | |
with: | |
path: gcs_cache | |
key: gcs_cache_notebooks_20240922 | |
- name: Run notebooks | |
run: jupyter nbconvert --execute notebooks/*.ipynb --inplace | |
- name: Save GCS cache | |
uses: actions/cache/save@v3 | |
if: always() | |
with: | |
path: gcs_cache | |
key: gcs_cache_notebooks_20240922 |