Fix shell path

marine-omics · Apr 2, 2024 · 2af1e0d · 2af1e0d
1 parent 4b65cd5
commit 2af1e0d
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/modules/freebayes.nf b/modules/freebayes.nf
@@ -101,7 +101,7 @@ process freebayes_collect {
     def prefix="freebayes"
 
     """
-    sort_vcf_files.sh | xargs cat | vcffirstheader | vcfstreamsort -w 1000 > ${prefix}.vcf
+    ./sort_vcf_files.sh | xargs cat | vcffirstheader | vcfstreamsort -w 1000 > ${prefix}.vcf
 
     bgzip ${prefix}.vcf
     tabix ${prefix}.vcf.gz