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Manually curated mappings between NMDC and NCBI Attribute mappings #1966

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Manually curated mappings between NMDC and NCBI Attribute mappings #1966

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b4bdc28
manual curation of NMDC NCBI Attribute mappings
sujaypatil96 May 13, 2024
3a54869
fix typo in manual NCBI mapping
sujaypatil96 May 13, 2024
aa661e5
ignore type slot in NCBI mappings
sujaypatil96 May 14, 2024
e205a84
ignore general name field PlannedProcess classes
sujaypatil96 May 14, 2024
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20 changes: 10 additions & 10 deletions assets/ncbi_mappings/ncbi_attribute_mappings_filled.tsv
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Original file line number Diff line number Diff line change
Expand Up @@ -299,7 +299,7 @@ Biosample mineral_nutr_regm TextValue mineral_nutr_regm
Biosample misc_param TextValue misc_param
Biosample mod_date string
Biosample n_alkanes TextValue n_alkanes
Biosample name string
Biosample name string sample_name
Biosample ncbi_taxonomy_name string
Biosample neon_biosample_identifiers external_identifier
Biosample nitrate QuantityValue nitrate
Expand Down Expand Up @@ -429,8 +429,8 @@ Biosample salinity_category string
Biosample salinity_meth TextValue salinity_meth
Biosample salt_regm TextValue salt_regm
Biosample samp_capt_status samp_capt_status_enum samp_capt_status
Biosample samp_collec_device string
Biosample samp_collec_method string
Biosample samp_collec_device string samp_collect_device
Biosample samp_collec_method string samp_collect_method
Biosample samp_collect_point samp_collect_point_enum samp_collect_point
Biosample samp_dis_stage samp_dis_stage_enum samp_dis_stage
Biosample samp_floor samp_floor_enum samp_floor
Expand Down Expand Up @@ -552,7 +552,7 @@ Biosample turbidity QuantityValue turbidity
Biosample tvdss_of_hcr_press QuantityValue tvdss_of_hcr_press
Biosample tvdss_of_hcr_temp QuantityValue tvdss_of_hcr_temp
Biosample typ_occup_density double
Biosample type string
Biosample type string MAN_IGNORE
Biosample ventilation_rate QuantityValue ventilation_rate
Biosample ventilation_type TextValue ventilation_type
Biosample vfa QuantityValue vfa
Expand Down Expand Up @@ -609,7 +609,7 @@ Extraction has_output NamedThing
Extraction id uriorcurie
Extraction input_mass QuantityValue
Extraction instrument_name string
Extraction name string
Extraction name string MAN_IGNORE
Extraction processing_institution processing_institution_enum
Extraction protocol_link Protocol
Extraction qc_comment string
Expand All @@ -627,7 +627,7 @@ LibraryPreparation id uriorcurie
LibraryPreparation instrument_name string
LibraryPreparation library_preparation_kit string
LibraryPreparation library_type LibraryTypeEnum
LibraryPreparation name string
LibraryPreparation name string MAN_IGNORE
LibraryPreparation pcr_cycles integer
LibraryPreparation processing_institution processing_institution_enum
LibraryPreparation protocol_link Protocol
Expand All @@ -649,7 +649,7 @@ OmicsProcessing insdc_bioproject_identifiers external_identifier
OmicsProcessing insdc_experiment_identifiers external_identifier
OmicsProcessing instrument_name string
OmicsProcessing mod_date string
OmicsProcessing name string
OmicsProcessing name string MAN_IGNORE
OmicsProcessing ncbi_project_name string
OmicsProcessing nucl_acid_amp TextValue
OmicsProcessing nucl_acid_ext TextValue
Expand All @@ -668,15 +668,15 @@ OmicsProcessing seq_quality_check TextValue
OmicsProcessing start_date string
OmicsProcessing target_gene TextValue
OmicsProcessing target_subfragment TextValue
OmicsProcessing type string
OmicsProcessing type string MAN_IGNORE
DataObject alternative_identifiers uriorcurie
DataObject compression_type string
DataObject data_object_type FileTypeEnum
DataObject description string description
DataObject file_size_bytes bytes
DataObject id uriorcurie
DataObject md5_checksum string
DataObject name string
DataObject type string
DataObject name string MAN_IGNORE
DataObject type string MAN_IGNORE
DataObject url string
DataObject was_generated_by Activity
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