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Template/update #133

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merged 38 commits into from
Mar 7, 2025
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6ab83fb
update .nf-core.yml
anoronh4 Sep 25, 2024
ae650a0
Template update for nf-core/tools version 2.14.1
anoronh4 Sep 25, 2024
485e901
Merge branch 'TEMPLATE' into template/update
anoronh4 Jan 8, 2025
f1419d7
Merge branch 'develop' into template/update
anoronh4 Jan 8, 2025
1dc9a05
fix .nf-core.yml linting error
anoronh4 Jan 8, 2025
7be91f7
fix pipeline schema draft
anoronh4 Jan 8, 2025
523f51a
fix linting errors
anoronh4 Jan 8, 2025
8d20a8a
fix linting errors with prettier
anoronh4 Jan 8, 2025
d0ac443
fix uninitialized ch_versions channel
anoronh4 Jan 8, 2025
75d42cc
fix reference to module file
anoronh4 Jan 8, 2025
e903e1b
fix call to getGenomeAttribute method
anoronh4 Jan 8, 2025
365b96b
Template update for nf-core/tools version 3.1.1
anoronh4 Jan 8, 2025
1f84f32
Merge branch 'TEMPLATE' into template/update
anoronh4 Jan 8, 2025
93ec27f
fix prettier linting issue
anoronh4 Jan 8, 2025
0c2edb8
removed redundant parameter in nextflow schema
anoronh4 Jan 8, 2025
f698a07
fix tests
anoronh4 Jan 9, 2025
00bcc86
update MULTIQC process calls
anoronh4 Jan 9, 2025
161663b
fix bugs in meta, replacing 'sample', 'fq_num', 'fastq_pair_id', etc …
anoronh4 Jan 9, 2025
91958da
empty
anoronh4 Jan 9, 2025
33e6aeb
update CHANGELOG.md for current PR
anoronh4 Jan 9, 2025
200ef51
add back software yaml file check in the pytest with different file name
anoronh4 Jan 9, 2025
fcb2ef2
update input schema
anoronh4 Jan 10, 2025
7bc7886
add schema input and validation for maf input sheet
anoronh4 Jan 10, 2025
fcace7d
update fillout test workflow
anoronh4 Jan 10, 2025
72df2d5
disable nf-core tools lint in github actions workflows
anoronh4 Jan 10, 2025
7ea13cc
empty
anoronh4 Jan 10, 2025
6c969d7
fix linting errors in input schema
anoronh4 Jan 10, 2025
80f1299
fixed fillout test with added nf-schema validation
anoronh4 Jan 10, 2025
810153a
change branch name develop to dev
anoronh4 Jan 27, 2025
f545c8b
Merge branch 'dev' into template/update
anoronh4 Jan 27, 2025
2fb3dc3
fix indentations
anoronh4 Jan 27, 2025
0eb8ada
Merge branch 'develop' into template/update
anoronh4 Feb 3, 2025
648e421
bugfix uncollected multiqc files for batch qc
anoronh4 Feb 4, 2025
d1d56f2
bugfix
anoronh4 Feb 4, 2025
22e7398
update actions/cache to v4
anoronh4 Feb 18, 2025
fcdbb2a
extend the description in the CHANGELOG
anoronh4 Feb 25, 2025
db0c18f
Adding contributor details in nextflow config
anoronh4 Feb 25, 2025
670eda1
changed type for bait parameter in the schema file
anoronh4 Mar 4, 2025
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change branch name develop to dev
anoronh4 committed Jan 27, 2025

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This commit was created on GitHub.com and signed with GitHub’s verified signature. The key has expired.
commit 810153ac72cfd05926496be314a8270e6cf0f193
2 changes: 1 addition & 1 deletion .github/workflows/pytest-workflow.yml
Original file line number Diff line number Diff line change
@@ -1,7 +1,7 @@
name: Pytest-workflow
on:
pull_request:
branches: [main, develop]
branches: [main, dev]

# Cancel if a newer run is started
concurrency:
2 changes: 1 addition & 1 deletion CHANGELOG.md
Original file line number Diff line number Diff line change
@@ -3,7 +3,7 @@
The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/)
and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).

## develop
## dev

### `Added`