First release of the neoantigen pipeline!
Contains the following steps:
Create phylogenetic trees using PhyloWGS
Use netMHCpan-4 to calculate binding affinities
Use netMHCpanStab to calculate stability scores
Use Luksza et al.'s neoantigen quality and fitness computations tool (NeoantigenEditing) to evaluate peptides
Docs, tests, and portable modules are included as well!
What's Changed
- Subworkflows merge test by @johnoooh in #32
- Input schema changes from nf-core default to new schema by @johnoooh in #33
- Adding netmhcpan by @johnoooh in #34
- Update README.md by @johnoooh in #37
- PR for MVP release! (for real) by @nikhil in #36
- Feature/netmhc refactor by @nikhil in #45
- Update input for test config by @nikhil in #48
- Dev by @nikhil in #49
- Feature/update modules to base develop by @nikhil in #50
- Dev by @nikhil in #51
- Release candidate for 1.0.0 by @nikhil in #46
New Contributors
Full Changelog: https://github.com/mskcc/neoantigen-pipeline/commits/1.0.0
Contributors
nikhil and johnoooh