Skip to content

Issues: mskcc/smile-server

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

75 Open 1,018 Closed
75 Open 1,018 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Create a Datadog alert when we reject sending a TEMPO sample to cBioPortal
#1399 opened Feb 7, 2025 by qu8n
smile internal server error when fetching some requests bug Something isn't working interrupt MetaDB Server Development
#1398 opened Feb 6, 2025 by ao508
Resolve samples found on cBioPortal but not on SMILE
#1397 opened Feb 6, 2025 by qu8n
Writeup document covering new CMO label logic updates
#1396 opened Feb 6, 2025 by ao508
ALT IDs: 65 ALT IDs to follow up on (re: their resolved nuc acid counters)
#1395 opened Feb 5, 2025 by ao508
1
Request 14606_R - samples didn't get the correct ids assigned. PM Request
#1394 opened Feb 5, 2025 by ao508
1
Assign new labels for samples with legacy labels that need an incremented nucleic acid counter
#1391 opened Jan 29, 2025 by ao508
1
SMILE dashboard to get TEMPO model data from database instead of calculating on the fly
#1387 opened Jan 29, 2025 by ao508
1
TEMPO - "backfill" (resolve) current values for initialRunDate and embargoDate
#1386 opened Jan 29, 2025 by ao508
1
Tempo model updates
#1385 opened Jan 29, 2025 by ao508
1
PLACEHOLDER: ALT ID follow up work Epic
#1384 opened Jan 29, 2025 by ao508
Update script that resolves duplicate patients to handle more complex cases
#1379 opened Jan 23, 2025 by qu8n
CMO Labels & ALT ID work Epic
#1377 opened Jan 22, 2025 by ao508
Adjust neo4j transactions to also rollback patient nodes created when a sample fails to import MetaDB Server Development
#1372 opened Jan 9, 2025 by ao508
1
Angelica - draft roadmap of SMILE 2025 goals
#1370 opened Jan 8, 2025 by ao508
Can we repurpose the comments field in sample metadata for logging changes made to data/labels. Dashboard Development
#1368 opened Jan 8, 2025 by ao508
[smile-server] monitor changes/updates to embargo status for tempo-cbio pipeline TEMPO-cBio Pipeline
#1354 opened Dec 18, 2024 by ao508
1
[smile-server] Publish (release) samples events for TEMPO-cBio pipeline TEMPO-cBio Pipeline
#1353 opened Dec 18, 2024 by ao508
1
TEMPO-cBio pipeline Epic TEMPO-cBio Pipeline
#1344 opened Dec 4, 2024 by ao508
Look into SMILE CRDB crosswalk table mappings discussion Bring issue up for discussion. external-dependencies
#1325 opened Nov 15, 2024 by ao508
Move 12-245 Part A/C consent status to patient-level metadata MetaDB Server Development
#1271 opened Sep 4, 2024 by ao508
1
Add new pub-sub topic for dbGap updates dbGaP NATS Server Administration
#1209 opened Jun 26, 2024 by ao508
1
Add message handler in SMILE server for incoming dbGap sample updates. dbGaP MetaDB Server Development
#1208 opened Jun 26, 2024 by ao508
Make dbGap info editable on SMILE dashboard (and push update to SMILE) Dashboard Development dbGaP
#1207 opened Jun 26, 2024 by ao508
Backfill existing dbGap sample data. dbGaP
#1206 opened Jun 26, 2024 by ao508
ProTip! Updated in the last three days: updated:>2025-02-05.