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Removing sharding, trying correct version of nextflow End-to-end MGS workflow test #12: Commit 00d3b5d pushed by harmonbhasin
November 21, 2024 20:00 13m 0s test-e2e
test-e2e
November 21, 2024 20:00 13m 0s
Trying sharding and splitting tests and we run out of memory on the m… End-to-end MGS workflow test #11: Commit 4a72e59 pushed by harmonbhasin
November 21, 2024 19:58 10s test-e2e
test-e2e
November 21, 2024 19:58 10s
Creating the a test that runs both index and run (with blast) End-to-end MGS workflow test #10: Commit 8ac8ca0 pushed by harmonbhasin
November 21, 2024 19:15 13m 15s test-e2e
test-e2e
November 21, 2024 19:15 13m 15s
Done: End-to-end MGS workflow test #9: Commit f39fafe pushed by harmonbhasin
November 20, 2024 22:26 7m 33s test-run
test-run
November 20, 2024 22:26 7m 33s
Hard code lower kraken End-to-end MGS workflow test #8: Commit 13ba7bf pushed by harmonbhasin
November 20, 2024 22:15 7m 2s test-run
test-run
November 20, 2024 22:15 7m 2s
Relaxed mem as well End-to-end MGS workflow test #7: Commit 914cd04 pushed by harmonbhasin
November 20, 2024 22:09 4m 11s test-run
test-run
November 20, 2024 22:09 4m 11s
hardcoded to lower but will need to hcange End-to-end MGS workflow test #6: Commit de9cc5a pushed by harmonbhasin
November 20, 2024 22:07 2m 31s test-run
test-run
November 20, 2024 22:07 2m 31s
Remove mem constraint End-to-end MGS workflow test #5: Commit a20d198 pushed by harmonbhasin
November 20, 2024 21:58 3m 55s test-run
test-run
November 20, 2024 21:58 3m 55s
Trying another multiqc container End-to-end MGS workflow test #4: Commit 831a463 pushed by harmonbhasin
November 20, 2024 21:52 1m 50s test-run
test-run
November 20, 2024 21:52 1m 50s
I have a hunch End-to-end MGS workflow test #3: Commit 2a49acd pushed by harmonbhasin
November 20, 2024 21:34 19m 11s test-run
test-run
November 20, 2024 21:34 19m 11s
Using nao-testing dir now End-to-end MGS workflow test #2: Commit a961a6a pushed by harmonbhasin
November 20, 2024 21:17 41s test-run
test-run
November 20, 2024 21:17 41s
Named the test to something more general End-to-end MGS workflow test #1: Commit 9c0887c pushed by harmonbhasin
November 20, 2024 20:02 47s test-run
test-run
November 20, 2024 20:02 47s
Updated bbmap_mem paramter to be passed in CI Tests #14: Commit 2b90d55 pushed by harmonbhasin
November 20, 2024 17:01 8m 58s test-index
test-index
November 20, 2024 17:01 8m 58s
Turns out we can use genera, just a valid one is necessary CI Tests #13: Commit 1d41310 pushed by harmonbhasin
November 20, 2024 16:25 9m 14s test-index
test-index
November 20, 2024 16:25 9m 14s
Let's try everything CI Tests #12: Commit 8cda2b0 pushed by harmonbhasin
November 19, 2024 20:25 29m 59s test-index
test-index
November 19, 2024 20:25 29m 59s
Trying custom images CI Tests #11: Commit 65e5333 pushed by harmonbhasin
November 19, 2024 20:17 6m 30s test-index
test-index
November 19, 2024 20:17 6m 30s
Trying container from sequera CI Tests #10: Commit fbb9d0b pushed by harmonbhasin
November 19, 2024 20:14 1m 20s test-index
test-index
November 19, 2024 20:14 1m 20s
need to confirm that this image is the issue CI Tests #9: Commit c6c84f5 pushed by harmonbhasin
November 19, 2024 20:11 56s test-index
test-index
November 19, 2024 20:11 56s
Turns out that it worked, so we'll introduce everythign agian CI Tests #8: Commit f7f9575 pushed by harmonbhasin
November 19, 2024 16:28 30m 43s test-index
test-index
November 19, 2024 16:28 30m 43s
bbmap defualts to 60 gb memory causing things to fail so i manually s… CI Tests #7: Commit 4c58df1 pushed by harmonbhasin
November 19, 2024 16:21 3m 59s test-index
test-index
November 19, 2024 16:21 3m 59s
Something tells me it's the base container CI Tests #6: Commit dbacfae pushed by harmonbhasin
November 19, 2024 16:14 2m 57s test-index
test-index
November 19, 2024 16:14 2m 57s
Let's see if I can even get this running CI Tests #5: Commit b53fcaa pushed by harmonbhasin
November 19, 2024 16:07 1m 19s test-index
test-index
November 19, 2024 16:07 1m 19s
Should fix issues CI Tests #4: Commit 5fcf687 pushed by harmonbhasin
November 19, 2024 15:49 8m 21s test-index
test-index
November 19, 2024 15:49 8m 21s
Hopefully verbose makes errors easier to understand? CI Tests #3: Commit 53e6fa7 pushed by harmonbhasin
November 19, 2024 15:41 6m 35s test-index
test-index
November 19, 2024 15:41 6m 35s
Fixing CI Tests #2: Commit d02f8a0 pushed by harmonbhasin
November 19, 2024 15:27 2m 17s test-index
test-index
November 19, 2024 15:27 2m 17s