pySeqRNA: a python-based package for RNASeq data analysis
Today, massive amounts of data are generated by Next-Generation Sequencing (NGS) technologies. In recent years, many algorithms, statistical methods, and software tools have been developed to perform the individual analysis steps of various NGS applications. However, streamlined analysis remains a significant barrier to effectively utilizing the technology. We have developed a Python package (pySeqRNA) that allows fast, efficient, manageable, and reproducible RNA-Seq analysis. It effectively uses current software and tools with newly written Python scripts without confining users to a collection of pre-defined methods and environments by combining many command-line tools and custom Python scripts.