Bugfix orderedset #10
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Create LICENSE.txt
removing unneeded htan csv file from schema folder
Two bug fixes - no version
…a-update HTAN schema update
…a-update Corrections to HTAN biospecimen schema
…a-update Changes to bulk WES to account for ctDNA and cfDNA; corrections to scATA-seq level 1
…x-tables Table update fix
…a-update Biospecimen corrections
…hierarchy Support listing all files in a dataset independent of folder hierarchy in the dataset
Pulling latest code from upstream
…a-update Schema updates - imaging level 1 and 2; biospecimen final updates
…a-update Bulk RNA-seql level 3 updates
…a-update Very minor update to biospecimen ID description
…-export Develop excel export
…-export Adjusted dropdown generation
Added issue templates for people to use when filing bug reports and feature requests
…ssue-templates Update issue templates
…a-update Added updates to clinical data schema: molecular test; tier 2; tier 3
… data validation dropdowns when latter are derived from workbook range
…a-update Minor updates: adding MERFISH to imaging level 2
… Isolation Method
…a-update Added Nuclei Isolation as an option for scRNA-seq level 1 Single Cell…
…usly only columns with dropdowns containing more than 10 items were explicitly added to the hidden sheet; this addresses a user-request from HTAN
Storing valid values in hidden sheet of metadata template
…im_commas_df-bugfix trim_commas_df to remove only trailing empty columns
…datasets with a lot of files (~10000)
Removing unneeded calls to Synapse from synapse store
Re: Sage-Bionetworks#397 add useSchemaLabel param to store.associateMetadataWithFiles
…/useSchemaLabel update store.py
…-patch-1 fix typo in store.py
…TAC-seq based on requests from data contributors
Schema updates
Getting latest codebase and schema from upstream
…in biothings, which does not have displayName attribute
Pulling schema updates from origin
- ordered-set: Switched from CPython-based non-precompiled 'orderedset' to pure Python-based 'ordered-set' functionality. The API seems similar / same, and should be especially OK to do this because it doesn't look like this it's being used yet in the project.
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Updates
Changed dependency: orderedset -> ordered-set
Related to
simonpercivall/orderedset#31
Issues with this pull request
I'm not sure which branch to merge this into. I'm hoping this is also the correct repository. The remote I'm using is labeled
https://github.com/ncihtan/HTAN-data-pipeline.git, and the branch isdevelop. But that repository redirects toncihtan/schematicwhen I try to access it.Additionally, I'm seeing a different commit histories here. Perhaps
HTAN-data-pipelineis private and I'm getting redirected?The last commit I see in
ncihtan/schematicis:But the last one I'm seeing in `ncihtan/HTAN-data-pipeline is: